Factsheet for Solyc06g073900.2.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 3
cytosol 1
peroxisome 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, peroxisome
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	peroxisome
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

plastid: 22908117
nucleus: 28394025

msms PMID: 28394025 doi

AJM Howden, R Stam, V Martinez Heredia, GB Motion, S Ten Have, K Hodge, TM Marques Monteiro Amaro, E Huitema

Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082060.1.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08480.1	Solyc02g082060.1.1	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400015105	Potato	nucleus	98.65	98.65
Solyc11g071790.1.1	Tomato	cytosol	87.16	86.58
CDX95057	Canola	cytosol	64.19	68.84
AT1G08480.1	Thale cress	cytosol	65.54	68.31
CDX93559	Canola	cytosol	63.51	68.12
VIT_07s0005g04750.t01	Wine grape	cytosol	66.89	67.81
Bra018622.1-P	Field mustard	cytosol	62.16	66.67
CDY31141	Canola	cytosol	62.84	65.96
Bra030729.1-P	Field mustard	cytosol	62.16	65.71
KRG89352	Soybean	cytosol	61.49	64.54
CDX97492	Canola	cytosol	61.49	64.54
GSMUA_Achr10P...	Banana	cytosol	42.57	45.0
GSMUA_Achr6P18420_001	Banana	cytosol	41.22	42.66
TraesCS7A01G319300.1	Wheat	cytosol	39.86	41.84
TraesCS7B01G220100.1	Wheat	golgi	39.86	41.84
TraesCS7D01G315800.1	Wheat	cytosol	39.86	41.84
Os08t0112800-01	Rice	mitochondrion	38.51	40.14
HORVU7Hr1G076300.3	Barley	cytosol	39.86	38.06
Zm00001d049691_P002	Maize	cytosol, mitochondrion	39.19	37.42
KXG24249	Sorghum	cytosol	37.84	36.84
Zm00001d035054_P002	Maize	cytosol, mitochondrion, peroxisome	38.51	34.34

Protein Annotations

EnsemblPlants:Solyc06g073900.2.1	EnsemblPlantsGene:Solyc06g073900.2	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005739	GO:GO:0005749	GO:GO:0016020	InterPro:SDH6	PANTHER:PTHR36708	UniParc:UPI0002766190
UniProt:K4C9A8	MapMan:2.3.6.1.6	:	:	:	:

Description

No Description!

Coordinates

chr6:-:45621200..45625051

Molecular Weight (calculated)

16822.7 Da

IEP (calculated)

6.807

GRAVY (calculated)

-0.372

Length

148 amino acids

Sequence
(BLAST)

001: MAEDSSSSQS FLRRYWEGYK EFWGERFSFL DNYSRFIKRD KPLPSWSDSD VEEFIASDPL HGPTLRTARE AVKISAVGGI IGAVSTAGVT WKYSRSLHGT
101: ALSLGAGAVF GWTFGQEVAN HWLQLYRLDT MAAQVKFMEW WQNKVEGQ

Best Arabidopsis Sequence Match ( AT1G08480.1 )
(BLAST)

001: MGDSESFVGK NWNGLKDFWS DRLSFFENYT RFTKRDAPLP SWSSSDVEEF IASDPVHGPT LKTAREAVTF GVTGAALGAV STAAFAWKYS RSPHGAALSF
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ

Arabidopsis Description

SDH6Succinate dehydrogenase subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q941A6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.