Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_AchrUn_... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08480.1 | GSMUA_AchrUn_... | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | cytosol | 84.62 | 86.43 |
| TraesCS7D01G315800.1 | Wheat | cytosol | 70.63 | 71.63 |
| TraesCS7B01G220100.1 | Wheat | golgi | 70.63 | 71.63 |
| TraesCS7A01G319300.1 | Wheat | cytosol | 70.63 | 71.63 |
| Os08t0112800-01 | Rice | mitochondrion | 69.23 | 69.72 |
| HORVU7Hr1G076300.3 | Barley | cytosol | 70.63 | 65.16 |
| Zm00001d049691_P002 | Maize | cytosol, mitochondrion | 69.93 | 64.52 |
| KXG24249 | Sorghum | cytosol | 65.73 | 61.84 |
| Zm00001d035054_P002 | Maize | cytosol, mitochondrion, peroxisome | 68.53 | 59.04 |
| PGSC0003DMT400007733 | Potato | cytosol | 44.76 | 42.95 |
| Solyc11g071790.1.1 | Tomato | cytosol | 44.76 | 42.95 |
| VIT_07s0005g04750.t01 | Wine grape | cytosol | 43.36 | 42.47 |
| PGSC0003DMT400015105 | Potato | nucleus | 43.36 | 41.89 |
| Solyc06g073900.2.1 | Tomato | nucleus | 42.66 | 41.22 |
| Bra018622.1-P | Field mustard | cytosol | 39.16 | 40.58 |
| Bra030729.1-P | Field mustard | cytosol | 39.16 | 40.0 |
| CDX93559 | Canola | cytosol | 38.46 | 39.86 |
| CDY31141 | Canola | cytosol | 39.16 | 39.72 |
| CDX97492 | Canola | cytosol | 38.46 | 39.01 |
| CDX95057 | Canola | cytosol | 37.06 | 38.41 |
| AT1G08480.1 | Thale cress | cytosol | 37.06 | 37.32 |
| KRG89352 | Soybean | cytosol | 36.36 | 36.88 |
Protein Annotations
| EnsemblPlants:GSMUA_Achr6P18420_001 | EnsemblPlants:GSMUA_Achr6T18420_001 | EnsemblPlantsGene:GSMUA_Achr6G18420_001 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005749 | GO:GO:0016020 | GO:GO:0016021 | InterPro:SDH6 |
| PANTHER:PTHR36708 | UniParc:UPI000296339F | UniProt:M0T840 | MapMan:2.3.6.1.6 | : | : |
Description
rickettsia 17 kDa surface antigen family protein, expressed [Source:GMGC_GENE;Acc:GSMUA_Achr6G18420_001]
Coordinates
chr6:-:12673498..12677075
Molecular Weight (calculated)
16517.7 Da
IEP (calculated)
9.682
GRAVY (calculated)
-0.485
Length
143 amino acids
Sequence
(BLAST)
(BLAST)
001: MGFLGRHYEE VKEHWKNNFA FLDYYKKTFG RRKPLPKWTD ADVEEFIASD PVYGPQLKDI RESRKYAIFG ALLSAAHLGG VSLRYSKSPH GFVLATGFGA
101: LCGGVLGLEV AEHWKQLYKI DKQATNLRFL YWWEDKTLGN QRN
101: LCGGVLGLEV AEHWKQLYKI DKQATNLRFL YWWEDKTLGN QRN
001: MGDSESFVGK NWNGLKDFWS DRLSFFENYT RFTKRDAPLP SWSSSDVEEF IASDPVHGPT LKTAREAVTF GVTGAALGAV STAAFAWKYS RSPHGAALSF
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
Arabidopsis Description
SDH6Succinate dehydrogenase subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q941A6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.