Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX95057 | Canola | cytosol | 83.8 | 86.23 |
| CDX93559 | Canola | cytosol | 83.1 | 85.51 |
| Bra018622.1-P | Field mustard | cytosol | 83.1 | 85.51 |
| CDX97492 | Canola | cytosol | 80.99 | 81.56 |
| CDY31141 | Canola | cytosol | 80.99 | 81.56 |
| Bra030729.1-P | Field mustard | cytosol | 80.28 | 81.43 |
| PGSC0003DMT400007733 | Potato | cytosol | 69.01 | 65.77 |
| Solyc06g073900.2.1 | Tomato | nucleus | 68.31 | 65.54 |
| KRG89352 | Soybean | cytosol | 64.79 | 65.25 |
| Solyc11g071790.1.1 | Tomato | cytosol | 68.31 | 65.1 |
| PGSC0003DMT400015105 | Potato | nucleus | 67.61 | 64.86 |
| VIT_07s0005g04750.t01 | Wine grape | cytosol | 64.79 | 63.01 |
| GSMUA_Achr10P... | Banana | cytosol | 39.44 | 40.0 |
| TraesCS7A01G319300.1 | Wheat | cytosol | 39.44 | 39.72 |
| TraesCS7B01G220100.1 | Wheat | golgi | 39.44 | 39.72 |
| TraesCS7D01G315800.1 | Wheat | cytosol | 39.44 | 39.72 |
| Os08t0112800-01 | Rice | mitochondrion | 37.32 | 37.32 |
| GSMUA_Achr6P18420_001 | Banana | cytosol | 37.32 | 37.06 |
| HORVU7Hr1G076300.3 | Barley | cytosol | 39.44 | 36.13 |
| Zm00001d049691_P002 | Maize | cytosol, mitochondrion | 38.73 | 35.48 |
| KXG24249 | Sorghum | cytosol | 37.32 | 34.87 |
| Zm00001d035054_P002 | Maize | cytosol, mitochondrion, peroxisome | 37.32 | 31.93 |
Protein Annotations
| MapMan:2.3.6.1.6 | EntrezGene:837369 | UniProt:A0A178WB84 | EMBL:AC006932 | ProteinID:AEE28297.1 | ArrayExpress:AT1G08480 |
| EnsemblPlantsGene:AT1G08480 | RefSeq:AT1G08480 | TAIR:AT1G08480 | RefSeq:AT1G08480-TAIR-G | EnsemblPlants:AT1G08480.1 | TAIR:AT1G08480.1 |
| EMBL:AY052314 | EMBL:AY061894 | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 |
| GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005743 | GO:GO:0005749 |
| GO:GO:0005773 | GO:GO:0005774 | GO:GO:0006091 | GO:GO:0006099 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009536 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0043495 | GO:GO:0045273 |
| RefSeq:NP_563819.1 | ProteinID:OAP15699.1 | PO:PO:0000005 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 |
| PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025195 | PO:PO:0025281 | PANTHER:PTHR36708 | UniProt:Q941A6 | InterPro:SDH6 | UniParc:UPI000009F0F4 |
Description
SDH6Succinate dehydrogenase subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q941A6]
Coordinates
chr1:+:2684176..2685702
Molecular Weight (calculated)
15813.4 Da
IEP (calculated)
6.806
GRAVY (calculated)
-0.305
Length
142 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSESFVGK NWNGLKDFWS DRLSFFENYT RFTKRDAPLP SWSSSDVEEF IASDPVHGPT LKTAREAVTF GVTGAALGAV STAAFAWKYS RSPHGAALSF
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.