CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 1
cytosol 2
plasma membrane 1
mitochondrion 1
nucleus 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH08874
KRH35244
KRH38387

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G08480.1	KRH08874	AT4G25660.1	21798944
AT1G08480.1	KRH35244	AT4G25660.1	21798944
AT1G08480.1	KRH38387	AT4G25660.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra018622.1-P	Field mustard	cytosol	66.67	68.12
CDX93559	Canola	cytosol	64.54	65.94
AT1G08480.1	Thale cress	cytosol	65.25	64.79
CDY31141	Canola	cytosol	64.54	64.54
CDX95057	Canola	cytosol	63.12	64.49
Bra030729.1-P	Field mustard	cytosol	63.83	64.29
CDX97492	Canola	cytosol	63.83	63.83
Solyc06g073900.2.1	Tomato	nucleus	64.54	61.49
PGSC0003DMT400007733	Potato	cytosol	64.54	61.07
Solyc11g071790.1.1	Tomato	cytosol	63.83	60.4
PGSC0003DMT400015105	Potato	nucleus	63.12	60.14
VIT_07s0005g04750.t01	Wine grape	cytosol	60.28	58.22
Os08t0112800-01	Rice	mitochondrion	40.43	40.14
TraesCS7A01G319300.1	Wheat	cytosol	39.72	39.72
TraesCS7B01G220100.1	Wheat	golgi	39.72	39.72
TraesCS7D01G315800.1	Wheat	cytosol	39.72	39.72
GSMUA_Achr10P...	Banana	cytosol	39.01	39.29
GSMUA_Achr6P18420_001	Banana	cytosol	36.88	36.36
HORVU7Hr1G076300.3	Barley	cytosol	39.72	36.13
Zm00001d049691_P002	Maize	cytosol, mitochondrion	39.72	36.13
KXG24249	Sorghum	cytosol	36.88	34.21
Zm00001d035054_P002	Maize	cytosol, mitochondrion, peroxisome	39.01	33.13

Protein Annotations

EntrezGene:100777981	MapMan:2.3.6.1.6	EMBL:ACUP02012206	EMBL:BT089859	UniProt:C6SXG5	EnsemblPlantsGene:GLYMA_20G018300
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005739	GO:GO:0005749
GO:GO:0016020	GO:GO:0045273	ProteinID:KRG89351.1	EnsemblPlants:KRG89352	ProteinID:KRG89352	ProteinID:KRG89352.1
ProteinID:KRG89353.1	ProteinID:KRG89354.1	ProteinID:KRG89355.1	PANTHER:PTHR36708	InterPro:SDH6	UniParc:UPI0001B1534C

Description

hypothetical protein

Coordinates

chr20:-:1899548..1903702

Molecular Weight (calculated)

15805.4 Da

IEP (calculated)

7.817

GRAVY (calculated)

-0.252

Length

141 amino acids

Sequence
(BLAST)

001: MADNTQSYWE GYKAFWSERF SFLSNYSRFI NRDKPIPSWS SSDVEEFIAS DPVHGPVLKS AREAVQFGLT GSALGALFTA GYAWKYSKSL HGAGLSFLAG
101: GIFGWTFGHE IANHTLQLYR VDTLAAEAKF LDWWNKKTGG Y

Best Arabidopsis Sequence Match ( AT1G08480.1 )
(BLAST)

001: MGDSESFVGK NWNGLKDFWS DRLSFFENYT RFTKRDAPLP SWSSSDVEEF IASDPVHGPT LKTAREAVTF GVTGAALGAV STAAFAWKYS RSPHGAALSF
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ

Arabidopsis Description

SDH6Succinate dehydrogenase subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q941A6]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.