Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- peroxisome 1
- plasma membrane 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Bra010452.1-P | |
| Bra013908.1-P | |
| Bra013910.1-P |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08480.1 | Bra010452.1-P | AT4G25660.1 | 21798944 |
| AT1G08480.1 | Bra013908.1-P | AT4G25660.1 | 21798944 |
| AT1G08480.1 | Bra013910.1-P | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY31141 | Canola | cytosol | 97.86 | 97.16 |
| CDX97492 | Canola | cytosol | 95.71 | 95.04 |
| Bra018622.1-P | Field mustard | cytosol | 90.0 | 91.3 |
| AT1G08480.1 | Thale cress | cytosol | 81.43 | 80.28 |
| KRG89352 | Soybean | cytosol | 64.29 | 63.83 |
| Solyc11g071790.1.1 | Tomato | cytosol | 67.86 | 63.76 |
| PGSC0003DMT400015105 | Potato | nucleus | 66.43 | 62.84 |
| PGSC0003DMT400007733 | Potato | cytosol | 66.43 | 62.42 |
| Solyc06g073900.2.1 | Tomato | nucleus | 65.71 | 62.16 |
| VIT_07s0005g04750.t01 | Wine grape | cytosol | 62.14 | 59.59 |
| GSMUA_Achr10P... | Banana | cytosol | 42.86 | 42.86 |
| TraesCS7A01G319300.1 | Wheat | cytosol | 41.43 | 41.13 |
| TraesCS7B01G220100.1 | Wheat | golgi | 41.43 | 41.13 |
| TraesCS7D01G315800.1 | Wheat | cytosol | 41.43 | 41.13 |
| Os08t0112800-01 | Rice | mitochondrion | 40.71 | 40.14 |
| GSMUA_Achr6P18420_001 | Banana | cytosol | 40.0 | 39.16 |
| HORVU7Hr1G076300.3 | Barley | cytosol | 41.43 | 37.42 |
| Zm00001d049691_P002 | Maize | cytosol, mitochondrion | 41.43 | 37.42 |
| KXG24249 | Sorghum | cytosol | 39.29 | 36.18 |
| Zm00001d035054_P002 | Maize | cytosol, mitochondrion, peroxisome | 40.0 | 33.73 |
Protein Annotations
| EnsemblPlants:Bra030729.1 | EnsemblPlants:Bra030729.1-P | EnsemblPlantsGene:Bra030729 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005749 | GO:GO:0016020 | InterPro:SDH6 | PANTHER:PTHR36708 |
| SEG:seg | UniParc:UPI0002546B82 | UniProt:M4EPK9 | MapMan:2.3.6.1.6 | : | : |
Description
AT1G08480 (E=1e-045) | unknown protein
Coordinates
chrA08:-:20613087..20614261
Molecular Weight (calculated)
15474.1 Da
IEP (calculated)
7.684
GRAVY (calculated)
-0.334
Length
140 amino acids
Sequence
(BLAST)
(BLAST)
001: MGDSRSLLDG FKGFWEERLS FLDNYTRFTK RDTPLPSWSS SDVDEFIASD PVNGPTLKTA REAAAFGATG AALGAVSTAA FAWKYSKSPH GAALSFLGGG
101: LFGWTFGQEV ANHTMQLYKL DTMAAQVKFM EWWERKSQRS
101: LFGWTFGQEV ANHTMQLYKL DTMAAQVKFM EWWERKSQRS
001: MGDSESFVGK NWNGLKDFWS DRLSFFENYT RFTKRDAPLP SWSSSDVEEF IASDPVHGPT LKTAREAVTF GVTGAALGAV STAAFAWKYS RSPHGAALSF
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
Arabidopsis Description
SDH6Succinate dehydrogenase subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q941A6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.