Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 3
- cytosol 3
- peroxisome 1
- extracellular 1
- mitochondrion 2
- plasma membrane 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400018924 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G08480.1 | PGSC0003DMT400018924 | AT4G25660.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc11g071790.1.1 | Tomato | cytosol | 97.99 | 97.99 |
| PGSC0003DMT400015105 | Potato | nucleus | 88.59 | 89.19 |
| CDX93559 | Canola | cytosol | 64.43 | 69.57 |
| CDX95057 | Canola | cytosol | 64.43 | 69.57 |
| AT1G08480.1 | Thale cress | cytosol | 65.77 | 69.01 |
| Bra018622.1-P | Field mustard | cytosol | 63.76 | 68.84 |
| CDX97492 | Canola | cytosol | 63.76 | 67.38 |
| CDY31141 | Canola | cytosol | 63.76 | 67.38 |
| Bra030729.1-P | Field mustard | cytosol | 62.42 | 66.43 |
| VIT_07s0005g04750.t01 | Wine grape | cytosol | 63.76 | 65.07 |
| KRG89352 | Soybean | cytosol | 61.07 | 64.54 |
| GSMUA_Achr10P... | Banana | cytosol | 43.62 | 46.43 |
| GSMUA_Achr6P18420_001 | Banana | cytosol | 42.95 | 44.76 |
| TraesCS7A01G319300.1 | Wheat | cytosol | 41.61 | 43.97 |
| TraesCS7B01G220100.1 | Wheat | golgi | 41.61 | 43.97 |
| TraesCS7D01G315800.1 | Wheat | cytosol | 41.61 | 43.97 |
| Os08t0112800-01 | Rice | mitochondrion | 39.6 | 41.55 |
| HORVU7Hr1G076300.3 | Barley | cytosol | 41.61 | 40.0 |
| Zm00001d049691_P002 | Maize | cytosol, mitochondrion | 40.27 | 38.71 |
| KXG24249 | Sorghum | cytosol | 38.26 | 37.5 |
| Zm00001d035054_P002 | Maize | cytosol, mitochondrion, peroxisome | 40.27 | 36.14 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400007733 | EnsemblPlantsGene:PGSC0003DMG400002990 | EntrezGene:102604663 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005739 | GO:GO:0005749 | GO:GO:0016020 | InterPro:SDH6 | PANTHER:PTHR36708 |
| PGSC:PGSC0003DMG400002990 | RefSeq:XP_006340313.1 | UniParc:UPI000294D602 | UniProt:M0ZTF8 | MapMan:2.3.6.1.6 | : |
Description
Conserved gene of unknown function [Source:PGSC_GENE;Acc:PGSC0003DMG400002990]
Coordinates
chr11:-:43249918..43253784
Molecular Weight (calculated)
16931.9 Da
IEP (calculated)
6.974
GRAVY (calculated)
-0.415
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MAEEDSVSKS FLRRHWEGYK EFWGERFSFL ENYSRFIKRD KPLPSWSEAD VEEFIASEPV HGPTLKTARE AAKFGAVGGL LGAVSTAGVT WKYSRSLHGT
101: ALSLGAGAVF GWTFGQEVAN HWLQLYRMDT MASQVKFMEW WQNKVEGQS
101: ALSLGAGAVF GWTFGQEVAN HWLQLYRMDT MASQVKFMEW WQNKVEGQS
001: MGDSESFVGK NWNGLKDFWS DRLSFFENYT RFTKRDAPLP SWSSSDVEEF IASDPVHGPT LKTAREAVTF GVTGAALGAV STAAFAWKYS RSPHGAALSF
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
101: LGGGVFGWTF GQEVANHTLQ LYKLDTMAAQ VKFMEWWERK SQ
Arabidopsis Description
SDH6Succinate dehydrogenase subunit 6, mitochondrial [Source:UniProtKB/Swiss-Prot;Acc:Q941A6]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.