Factsheet for PGSC0003DMT400008196

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, nucleus, cytosol

Predictor Summary:

nucleus 3
plastid 1
mitochondrion 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g097110.2.1	Tomato	nucleus	98.92	98.92
VIT_16s0039g01860.t01	Wine grape	cytosol, nucleus, plastid	76.62	76.9
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	64.39	73.36
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	70.86	70.86
PGSC0003DMT400038377	Potato	cytosol	69.78	69.04
Os06t0112400-01	Rice	plasma membrane	61.51	65.52
EER89059	Sorghum	cytosol	62.95	65.06
HORVU7Hr1G003710.1	Barley	cytosol	61.15	64.64
CDX70721	Canola	cytosol	60.43	64.37
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	61.51	64.29
Bra006373.1-P	Field mustard	cytosol	60.07	63.98
CDX78713	Canola	cytosol	60.07	63.98
TraesCS7D01G027100.1	Wheat	plastid	61.15	63.91
AT5G16840.2	Thale cress	nucleus	59.71	63.85
CDX69415	Canola	cytosol	58.63	62.69
Bra008589.1-P	Field mustard	cytosol	58.99	62.6
Bra023585.1-P	Field mustard	nucleus	56.12	61.66
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	60.79	60.79
PGSC0003DMT400069547	Potato	nucleus	69.78	57.06
GSMUA_Achr8P14700_001	Banana	plastid	61.87	56.39
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	56.12	56.12
Os04t0594400-01	Rice	plasma membrane	62.59	55.41
EES12769	Sorghum	cytosol	62.59	55.41
Zm00001d002475_P001	Maize	extracellular	61.87	54.78
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	61.87	54.78
KRH24024	Soybean	nucleus	57.19	54.45
TraesCS7A01G030900.2	Wheat	plastid	61.15	53.97
TraesCS2D01G444000.1	Wheat	extracellular	60.43	53.33
TraesCS2A01G445100.1	Wheat	extracellular	60.07	52.68
TraesCS2B01G466100.1	Wheat	extracellular	60.07	52.68
CDY16974	Canola	plastid	58.63	51.26
Zm00001d035920_P002	Maize	extracellular, vacuole	62.59	50.29
Zm00001d054082_P001	Maize	cytosol	51.08	50.18
CDX85485	Canola	plastid	56.47	49.84
Zm00001d031612_P001	Maize	cytosol	42.09	48.75
Zm00001d026150_P001	Maize	cytosol	42.09	48.75
Zm00001d046992_P001	Maize	cytosol	52.52	44.65
PGSC0003DMT400018578	Potato	cytosol	43.88	44.36
Os04t0624800-01	Rice	nucleus	58.27	43.09
OQU85574	Sorghum	nucleus	57.55	40.92
TraesCS6D01G249000.1	Wheat	nucleus, plastid	56.12	40.84
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	47.48	40.62
TraesCS6A01G265600.1	Wheat	extracellular	56.47	39.55
Zm00001d051524_P002	Maize	nucleus	56.83	39.21
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	55.76	39.04
CDY38083	Canola	nucleus	56.83	37.71
Zm00001d014267_P001	Maize	nucleus	56.12	36.97
PGSC0003DMT400017749	Potato	cytosol	33.81	36.86
PGSC0003DMT400065786	Potato	cytosol, nucleus, plastid	32.37	36.73
Zm00001d046215_P001	Maize	cytosol	39.21	34.06

Protein Annotations

EntrezGene:102583725	Gene3D:3.30.70.330	MapMan:35.1	GO:GO:0003674	GO:GO:0003676	GO:GO:0003723
GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677	UniProt:M0ZU86	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076
EnsemblPlantsGene:PGSC0003DMG400003159	PGSC:PGSC0003DMG400003159	EnsemblPlants:PGSC0003DMT400008196	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF6
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI0002950CEF	InterPro:Vip1-like_RRM_plant
RefSeq:XP_006347584.1	:	:	:	:	:

Description

Nucleic acid binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400003159]

Coordinates

chr3:+:46693034..46697689

Molecular Weight (calculated)

29497.9 Da

IEP (calculated)

5.490

GRAVY (calculated)

-0.299

Length

278 amino acids

Sequence
(BLAST)

001: MSARTVKVSN VSLGASEQDI KEFFSFSGDI EYVEMMSENE RSQIAYVTFK DPQGAETAVL LSGATIIDQS VTIVPEPDYE LPPTALVPIK ATESANAAGG
101: GSAIQKAEDV VSSMLAKGFI LGKDAVNKAK TFDEKHQFTS TASAKVASLD QKIGLSEKIN LGATIVNDKV KEMDQKFHVS EKTKSALAAA EQTVSTAGSA
201: IMKNRYVLTG ASWVTGAFNK VTKAAGEVGQ KTKEKMAEEE QAKNSAEGYV PIHALSESPK ASKTEEPTKP SSPKGLIL

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.