Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 1
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDX70721 | Canola | cytosol | 88.08 | 87.74 |
| Bra006373.1-P | Field mustard | cytosol | 87.69 | 87.36 |
| CDX78713 | Canola | cytosol | 87.69 | 87.36 |
| Bra023585.1-P | Field mustard | nucleus | 85.0 | 87.35 |
| CDX69415 | Canola | cytosol | 85.38 | 85.38 |
| Bra008589.1-P | Field mustard | cytosol | 85.77 | 85.11 |
| CDY16974 | Canola | plastid | 86.54 | 70.75 |
| CDX85485 | Canola | plastid | 85.38 | 70.48 |
| GSMUA_Achr9P23330_001 | Banana | nucleus, peroxisome, plastid | 58.46 | 62.3 |
| Os06t0112400-01 | Rice | plasma membrane | 60.0 | 59.77 |
| Solyc03g097110.2.1 | Tomato | nucleus | 63.85 | 59.71 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 63.85 | 59.71 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 63.08 | 59.21 |
| EER89059 | Sorghum | cytosol | 61.15 | 59.11 |
| HORVU7Hr1G003710.1 | Barley | cytosol | 58.85 | 58.17 |
| GSMUA_AchrUn_... | Banana | cytosol, extracellular, nucleus | 61.15 | 57.19 |
| TraesCS7D01G027100.1 | Wheat | plastid | 58.08 | 56.77 |
| TraesCS4A01G458600.1 | Wheat | cytosol, nucleus, plastid | 58.08 | 56.77 |
| Zm00001d045559_P002 | Maize | cytosol, endoplasmic reticulum, nucleus | 58.85 | 55.04 |
| CDY38083 | Canola | nucleus | 85.77 | 53.22 |
| KRH24024 | Soybean | nucleus | 54.62 | 48.63 |
| TraesCS7A01G030900.2 | Wheat | plastid | 58.08 | 47.94 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 50.38 | 47.12 |
| AT5G46870.1 | Thale cress | nucleus | 53.46 | 47.12 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 56.15 | 46.65 |
| Zm00001d035920_P002 | Maize | extracellular, vacuole | 60.38 | 45.38 |
| PGSC0003DMT400069547 | Potato | nucleus | 58.85 | 45.0 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 51.92 | 44.26 |
| Os04t0594400-01 | Rice | plasma membrane | 52.69 | 43.63 |
| Zm00001d054082_P001 | Maize | cytosol | 47.31 | 43.46 |
| Zm00001d002475_P001 | Maize | extracellular | 52.31 | 43.31 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 51.92 | 42.99 |
| EES12769 | Sorghum | cytosol | 51.92 | 42.99 |
| TraesCS2D01G444000.1 | Wheat | extracellular | 51.15 | 42.22 |
| TraesCS2A01G445100.1 | Wheat | extracellular | 51.15 | 41.96 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 50.77 | 41.64 |
| AT5G32450.1 | Thale cress | cytosol | 42.69 | 41.57 |
| Solyc06g072770.2.1 | Tomato | nucleus | 57.69 | 41.21 |
| AT1G67950.2 | Thale cress | cytosol | 43.85 | 40.86 |
| Zm00001d031612_P001 | Maize | cytosol | 37.69 | 40.83 |
| Zm00001d026150_P001 | Maize | cytosol | 37.69 | 40.83 |
| Zm00001d046992_P001 | Maize | cytosol | 48.85 | 38.84 |
| AT1G14340.1 | Thale cress | nucleus | 35.77 | 38.11 |
| Os04t0624800-01 | Rice | nucleus | 52.31 | 36.17 |
| OQU85574 | Sorghum | nucleus | 51.54 | 34.27 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 41.92 | 33.54 |
| Zm00001d051524_P002 | Maize | nucleus | 50.38 | 32.51 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 47.69 | 32.46 |
| TraesCS6A01G265600.1 | Wheat | extracellular | 48.46 | 31.74 |
| TraesCS6B01G292900.1 | Wheat | endoplasmic reticulum, extracellular | 47.31 | 30.98 |
| Zm00001d014267_P001 | Maize | nucleus | 50.0 | 30.81 |
| AT3G01210.1 | Thale cress | cytosol | 29.23 | 30.52 |
| Zm00001d046215_P001 | Maize | cytosol | 36.15 | 29.38 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:831547 | ProteinID:AED92347.1 | ArrayExpress:AT5G16840 | EnsemblPlantsGene:AT5G16840 |
| RefSeq:AT5G16840 | TAIR:AT5G16840 | RefSeq:AT5G16840-TAIR-G | EnsemblPlants:AT5G16840.2 | TAIR:AT5G16840.2 | Symbol:BPA1 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_001078595.1 |
| InterPro:Nucleotide-bd_a/b_plait_sf | PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000084 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001016 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 |
| PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 |
| PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 |
| PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 |
| PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 |
| PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025195 | PO:PO:0025281 |
| PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF6 | InterPro:RBD_domain_sf | InterPro:RRM_dom | SMART:SM00360 |
| SUPFAM:SSF54928 | UniParc:UPI00015055E2 | SEG:seg | : | : | : |
Description
BPA1binding partner of acd11 1 [Source:TAIR;Acc:AT5G16840]
Coordinates
chr5:+:5535869..5538250
Molecular Weight (calculated)
27322.7 Da
IEP (calculated)
5.371
GRAVY (calculated)
-0.329
Length
260 amino acids
Sequence
(BLAST)
(BLAST)
001: MASQVRSVKV GNLSSGATEH DIKEFFSFSG EVESIDIQSS NEHSAYVTFK ETQGAETAVL LSGASIADQS VIIELAPNYS PPAAPHAETQ SSGAESVVQK
101: AEDVVSSMLA KGFILGKDAV GKAKAFDEKH GFTSTATAGV ASLDQKIGLS QKLTAGTSLV NEKIKAVDQN FQVTERTKSV YAAAEQTVSS AGSAVMKNRY
201: VLTGVSWAAG AFNRVAQAAG EVGQKTKEKV EAEQPSQPAQ SQQQLPEGYS PIHSSEYSKN
101: AEDVVSSMLA KGFILGKDAV GKAKAFDEKH GFTSTATAGV ASLDQKIGLS QKLTAGTSLV NEKIKAVDQN FQVTERTKSV YAAAEQTVSS AGSAVMKNRY
201: VLTGVSWAAG AFNRVAQAAG EVGQKTKEKV EAEQPSQPAQ SQQQLPEGYS PIHSSEYSKN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.