Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- mitochondrion 1
- cytosol 2
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY38176 | Canola | cytosol | 82.02 | 83.27 |
| Bra039914.1-P | Field mustard | cytosol | 81.65 | 82.89 |
| CDY25131 | Canola | cytosol, mitochondrion, nucleus, plastid | 80.9 | 81.2 |
| VIT_08s0032g00290.t01 | Wine grape | cytosol | 70.41 | 70.15 |
| Solyc10g076890.1.1 | Tomato | cytosol | 71.16 | 69.6 |
| PGSC0003DMT400018578 | Potato | cytosol | 71.16 | 69.09 |
| KRH06674 | Soybean | cytosol | 70.41 | 68.12 |
| GSMUA_Achr4P10680_001 | Banana | cytosol | 67.04 | 67.55 |
| KRG94865 | Soybean | cytosol | 59.93 | 64.78 |
| GSMUA_Achr8P04640_001 | Banana | cytosol | 64.04 | 64.29 |
| EER93456 | Sorghum | cytosol | 62.92 | 60.87 |
| CDY60084 | Canola | cytosol, nucleus, plastid | 17.23 | 60.53 |
| Zm00001d013271_P003 | Maize | cytosol | 62.17 | 59.07 |
| TraesCS5B01G392900.1 | Wheat | cytosol | 59.93 | 58.82 |
| TraesCS5A01G387800.1 | Wheat | cytosol | 59.55 | 58.46 |
| TraesCS5D01G397700.2 | Wheat | cytosol | 60.3 | 58.12 |
| Os03t0748900-01 | Rice | cytosol | 60.3 | 57.91 |
| HORVU5Hr1G095000.1 | Barley | nucleus | 59.18 | 42.82 |
| AT5G16840.2 | Thale cress | nucleus | 41.57 | 42.69 |
| GSMUA_AchrUn_... | Banana | cytosol | 25.09 | 41.61 |
| AT5G46870.1 | Thale cress | nucleus | 43.07 | 38.98 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 43.82 | 37.38 |
| AT1G14340.1 | Thale cress | nucleus | 33.33 | 36.48 |
| AT1G67950.2 | Thale cress | cytosol | 37.45 | 35.84 |
| AT3G01210.1 | Thale cress | cytosol | 31.09 | 33.33 |
| Zm00001d033453_P001 | Maize | cytosol | 36.33 | 28.87 |
Protein Annotations
| Gene3D:3.30.70.330 | MapMan:35.1 | EntrezGene:833204 | UniProt:A0A178U9V9 | ProteinID:AED93882.1 | EMBL:AK117709 |
| ArrayExpress:AT5G32450 | EnsemblPlantsGene:AT5G32450 | RefSeq:AT5G32450 | TAIR:AT5G32450 | RefSeq:AT5G32450-TAIR-G | EnsemblPlants:AT5G32450.1 |
| TAIR:AT5G32450.1 | EMBL:AY088345 | EMBL:BT005606 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 |
| GO:GO:0005488 | InterPro:IPR000504 | InterPro:IPR012677 | RefSeq:NP_568522.1 | InterPro:Nucleotide-bd_a/b_plait_sf | ProteinID:OAO89937.1 |
| PFAM:PF00076 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000293 | PO:PO:0001054 |
| PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PFscan:PS50102 | PANTHER:PTHR44136 | PANTHER:PTHR44136:SF3 | UniProt:Q8L9M9 | InterPro:RBD_domain_sf |
| InterPro:RRM_dom | SMART:SM00360 | SUPFAM:SSF54928 | UniParc:UPI000000C6CD | InterPro:Vip1-like_RRM_plant | : |
Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8L9M9]
Coordinates
chr5:+:12079528..12081647
Molecular Weight (calculated)
28974.4 Da
IEP (calculated)
9.956
GRAVY (calculated)
-0.272
Length
267 amino acids
Sequence
(BLAST)
(BLAST)
001: MQTTRSVQVN NVSDLATERE IHEFFSFSGD IEHIEIQKEF GQSRIAFVTF TDPKALEIAL LLSGATIVDQ IVTITRAENY VQRRETQEVR MLDNAMPLGL
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV
101: QESTTQTKTN MDGNSRAYVS KAQDVVATVL AKGSALGQDA VNKAKAFDEK HQLRANASAK VSSFDKRVGL TEKLSVGISA VNEKVKSVDQ KLQVSDKTMA
201: AIFAAERKLN DTGSAVKSSR YVTAGAAWFS GAFSKVARVG QVAGSKTKEK FNLAVSNMSS KDTPIAV
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.