Factsheet for AT4G17720.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, nucleus, cytosol

Predictor Summary:

nucleus 2
mitochondrion 1
plastid 1
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, nucleus, plastid
Any Predictor:	cytosol, nucleus, plastid
BaCelLo:	nucleus
MultiLoc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90453	Canola	cytosol	90.42	91.59
CDY01477	Canola	cytosol	87.86	90.76
Bra012646.1-P	Field mustard	nucleus	90.1	90.38
CDY01476	Canola	cytosol	40.89	89.51
Bra040177.1-P	Field mustard	nucleus	86.26	89.4
CDX78795	Canola	nucleus	85.94	88.78
CDY60787	Canola	nucleus	85.62	88.45
CDY01473	Canola	nucleus	53.35	84.34
AT5G46870.1	Thale cress	nucleus	70.93	75.25
VIT_02s0012g01860.t01	Wine grape	cytosol	64.22	71.28
KRH39571	Soybean	nucleus	63.58	71.07
KRH74377	Soybean	endoplasmic reticulum	62.62	70.25
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	54.63	70.08
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	61.02	68.7
Solyc08g076530.2.1	Tomato	plastid	61.34	68.33
PGSC0003DMT400038377	Potato	cytosol	61.02	67.97
CDX90455	Canola	cytosol	45.05	67.79
Bra012647.1-P	Field mustard	cytosol	45.05	67.79
EER89059	Sorghum	cytosol	52.72	61.34
Os06t0112400-01	Rice	plasma membrane	50.8	60.92
HORVU7Hr1G003710.1	Barley	cytosol	50.48	60.08
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	50.48	59.4
TraesCS7D01G027100.1	Wheat	plastid	50.48	59.4
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	52.4	58.99
AT5G16840.2	Thale cress	nucleus	46.65	56.15
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	53.99	53.82
Os04t0594400-01	Rice	plasma membrane	53.99	53.82
GSMUA_Achr8P14700_001	Banana	plastid	52.4	53.77
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	47.28	53.24
EES12769	Sorghum	cytosol	53.35	53.18
Zm00001d002475_P001	Maize	extracellular	53.35	53.18
TraesCS2D01G444000.1	Wheat	extracellular	53.35	53.02
TraesCS2A01G445100.1	Wheat	extracellular	52.72	52.05
TraesCS2B01G466100.1	Wheat	extracellular	52.72	52.05
TraesCS7A01G030900.2	Wheat	plastid	50.48	50.16
Zm00001d026150_P001	Maize	cytosol	37.7	49.17
Zm00001d031612_P001	Maize	cytosol	37.7	49.17
Zm00001d035920_P002	Maize	extracellular, vacuole	52.72	47.69
Zm00001d054082_P001	Maize	cytosol	41.21	45.58
AT1G67950.2	Thale cress	cytosol	39.62	44.44
AT5G32450.1	Thale cress	cytosol	37.38	43.82
Os04t0624800-01	Rice	nucleus	49.52	41.22
Zm00001d046992_P001	Maize	cytosol	42.49	40.67
TraesCS6D01G249000.1	Wheat	nucleus, plastid	49.2	40.31
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	41.85	40.31
TraesCS6A01G265600.1	Wheat	extracellular	49.52	39.04
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	48.88	38.54
OQU85574	Sorghum	nucleus	47.92	38.36
AT1G14340.1	Thale cress	nucleus	28.43	36.48
Zm00001d051524_P002	Maize	nucleus	46.33	35.98
Zm00001d014267_P001	Maize	nucleus	45.69	33.89
AT3G01210.1	Thale cress	cytosol	25.88	32.53
Zm00001d046215_P001	Maize	cytosol	32.59	31.88

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EntrezGene:827493	ProteinID:AEE83940.1	ArrayExpress:AT4G17720	EnsemblPlantsGene:AT4G17720
RefSeq:AT4G17720	TAIR:AT4G17720	RefSeq:AT4G17720-TAIR-G	EnsemblPlants:AT4G17720.1	TAIR:AT4G17720.1	EMBL:AY087960
Unigene:At.32973	EMBL:BT004039	EMBL:BT005158	ncoils:Coil	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005829	GO:GO:0008150	GO:GO:0009719	GO:GO:0009735	InterPro:IPR000504	InterPro:IPR012677
RefSeq:NP_567536.1	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PO:PO:0000005	PO:PO:0000013	PO:PO:0000037
PO:PO:0000230	PO:PO:0000293	PO:PO:0001016	PO:PO:0001017	PO:PO:0001054	PO:PO:0001078
PO:PO:0001081	PO:PO:0001185	PO:PO:0004507	PO:PO:0007064	PO:PO:0007095	PO:PO:0007098
PO:PO:0007103	PO:PO:0007115	PO:PO:0007123	PO:PO:0007611	PO:PO:0007616	PO:PO:0008019
PO:PO:0009005	PO:PO:0009006	PO:PO:0009009	PO:PO:0009010	PO:PO:0009025	PO:PO:0009029
PO:PO:0009030	PO:PO:0009031	PO:PO:0009032	PO:PO:0009046	PO:PO:0009047	PO:PO:0009052
PO:PO:0020030	PO:PO:0020038	PO:PO:0020100	PO:PO:0020137	PO:PO:0025022	PO:PO:0025195
PO:PO:0025281	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF5	UniProt:Q8LA96	InterPro:RBD_domain_sf
InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI000000C24A	SEG:seg	:

Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]

Coordinates

chr4:-:9862365..9864663

Molecular Weight (calculated)

33549.6 Da

IEP (calculated)

5.902

GRAVY (calculated)

-0.452

Length

313 amino acids

Sequence
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.