Factsheet for Bra012646.1-P

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 5
plastid 1
mitochondrion 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Bra001418.1-P
Bra002620.1-P
Bra010452.1-P
Bra013908.1-P
Bra013910.1-P
Bra014069.1-P
Bra019475.1-P
Bra032216.1-P
Bra033830.1-P
Bra038265.1-P
Bra038676.1-P

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G17720.1	Bra014069.1-P	AT1G47260.1	21798944
AT4G17720.1	Bra032216.1-P	AT1G47260.1	21798944
AT4G17720.1	Bra001418.1-P	AT3G11730.1	21798944
AT4G17720.1	Bra038676.1-P	AT3G11730.1	21798944
AT4G17720.1	Bra019475.1-P	AT3G46060.1	21798944
AT4G17720.1	Bra033830.1-P	AT3G46060.1	21798944
AT4G17720.1	Bra038265.1-P	AT3G46060.1	21798944
AT4G17720.1	Bra010452.1-P	AT4G25680.1	21798944
AT4G17720.1	Bra013908.1-P	AT4G25680.1	21798944
AT4G17720.1	Bra013910.1-P	AT4G25680.1	21798944
AT4G17720.1	Bra002620.1-P	AT5G58750.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX90453	Canola	cytosol	98.08	99.03
CDY01477	Canola	cytosol	93.59	96.37
AT4G17720.1	Thale cress	cytosol, nucleus, plastid	90.38	90.1
Bra040177.1-P	Field mustard	nucleus	85.58	88.41
VIT_02s0012g01860.t01	Wine grape	cytosol	63.46	70.21
GSMUA_Achr9P23330_001	Banana	nucleus, peroxisome, plastid	54.81	70.08
KRH39571	Soybean	nucleus	62.5	69.64
KRH74377	Soybean	endoplasmic reticulum	62.18	69.53
Solyc08g076530.2.1	Tomato	plastid	61.86	68.68
PGSC0003DMT400038377	Potato	cytosol	61.54	68.33
Bra012647.1-P	Field mustard	cytosol	44.87	67.31
GSMUA_AchrUn_...	Banana	cytosol, extracellular, nucleus	59.62	66.91
Bra024988.1-P	Field mustard	vacuole	70.83	66.37
EER89059	Sorghum	cytosol	53.21	61.71
Os06t0112400-01	Rice	plasma membrane	50.64	60.54
HORVU7Hr1G003710.1	Barley	cytosol	50.64	60.08
TraesCS4A01G458600.1	Wheat	cytosol, nucleus, plastid	50.64	59.4
TraesCS7D01G027100.1	Wheat	plastid	50.64	59.4
Zm00001d045559_P002	Maize	cytosol, endoplasmic reticulum, nucleus	52.88	59.35
Bra006373.1-P	Field mustard	cytosol	47.76	57.09
GSMUA_Achr8P14700_001	Banana	plastid	53.85	55.08
Bra023585.1-P	Field mustard	nucleus	44.55	54.94
Os04t0594400-01	Rice	plasma membrane	55.13	54.78
GSMUA_Achr5P14070_001	Banana	cytosol, nucleus, plastid	48.72	54.68
Zm00001d026206_P001	Maize	cytosol, nucleus, plastid	54.81	54.46
Bra008589.1-P	Field mustard	cytosol	45.51	54.2
EES12769	Sorghum	cytosol	54.49	54.14
Zm00001d002475_P001	Maize	extracellular	54.17	53.82
TraesCS2D01G444000.1	Wheat	extracellular	53.53	53.02
TraesCS2B01G466100.1	Wheat	extracellular	53.21	52.37
TraesCS2A01G445100.1	Wheat	extracellular	52.88	52.05
TraesCS7A01G030900.2	Wheat	plastid	50.64	50.16
Zm00001d026150_P001	Maize	cytosol	37.82	49.17
Zm00001d031612_P001	Maize	cytosol	37.82	49.17
Zm00001d035920_P002	Maize	extracellular, vacuole	53.21	47.98
Zm00001d054082_P001	Maize	cytosol	42.63	47.0
Bra039914.1-P	Field mustard	cytosol	35.58	42.21
Os04t0624800-01	Rice	nucleus	50.64	42.02
Zm00001d046992_P001	Maize	cytosol	43.91	41.9
TraesCS6D01G249000.1	Wheat	nucleus, plastid	50.64	41.36
Zm00001d031493_P001	Maize	cytosol, mitochondrion, plastid	42.31	40.62
TraesCS6A01G265600.1	Wheat	extracellular	50.96	40.05
TraesCS6B01G292900.1	Wheat	endoplasmic reticulum, extracellular	50.32	39.55
OQU85574	Sorghum	nucleus	49.36	39.39
Bra019660.1-P	Field mustard	cytosol	30.13	38.52
Bra016705.1-P	Field mustard	nucleus	29.81	38.11
Zm00001d051524_P002	Maize	nucleus	47.76	36.97
Zm00001d014267_P001	Maize	nucleus	47.12	34.83
Zm00001d046215_P001	Maize	cytosol	33.65	32.81
Bra001017.1-P	Field mustard	cytosol, nucleus, plastid	24.68	30.56

Protein Annotations

Gene3D:3.30.70.330	MapMan:35.1	EnsemblPlantsGene:Bra012646	EnsemblPlants:Bra012646.1	EnsemblPlants:Bra012646.1-P	ncoils:Coil
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0005488	InterPro:IPR000504	InterPro:IPR012677
UniProt:M4D836	InterPro:Nucleotide-bd_a/b_plait_sf	PFAM:PF00076	PFscan:PS50102	PANTHER:PTHR44136	PANTHER:PTHR44136:SF5
InterPro:RBD_domain_sf	InterPro:RRM_dom	SMART:SM00360	SUPFAM:SSF54928	UniParc:UPI00025409AC	SEG:seg

Description

AT4G17720 (E=8e-135) | RNA recognition motif (RRM)-containing protein

Coordinates

chrA03:-:22956893..22958409

Molecular Weight (calculated)

33618.6 Da

IEP (calculated)

6.011

GRAVY (calculated)

-0.498

Length

312 amino acids

Sequence
(BLAST)

001: MSMMTTVKVS NVSLGATDRD LKEFFSFSGD ILYLETQSET ERSKLAYVTF KDLQGAETAV LLSGATIVDS SVIVTMAPDY QLSPEALASL EPKESSKSPR
101: AGGDSVLRKA EDVVSSMLAK GFILGKDAIA KAKSVDEKHQ LTSTASAKVA SLDKKLGLTD KINTGTVVVG DKVREVDHKY QVSEKTKSAI AAAEQTVSNA
201: GSAIMKNRYV LTGATWVTGA FNKVAKAAEE VGQKAKEKVG MAEEEDKRKV VDEFARVHFS ESPKAPSSKD EVVHEPKLSE SPEPKESEHH EPQQQQQPQQ
301: QQSPPPVAPA QP

Best Arabidopsis Sequence Match ( AT4G17720.1 )
(BLAST)

001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP

Arabidopsis Description

Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.