Subcellular Localization
min:
: max
Winner_takes_all: extracellular
Predictor Summary:
Predictor Summary:
- plastid 2
- nucleus 1
- extracellular 3
- endoplasmic reticulum 2
- vacuole 2
- plasma membrane 2
- golgi 2
- cytosol 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS2A01G445100.1 | Wheat | extracellular | 99.05 | 98.42 |
| TraesCS2B01G466100.1 | Wheat | extracellular | 97.78 | 97.16 |
| Os04t0594400-01 | Rice | plasma membrane | 83.17 | 83.44 |
| EES12769 | Sorghum | cytosol | 82.22 | 82.48 |
| Zm00001d026206_P001 | Maize | cytosol, nucleus, plastid | 81.27 | 81.53 |
| Zm00001d002475_P001 | Maize | extracellular | 80.63 | 80.89 |
| Zm00001d031612_P001 | Maize | cytosol | 55.87 | 73.33 |
| Zm00001d026150_P001 | Maize | cytosol | 55.87 | 73.33 |
| VIT_16s0039g01860.t01 | Wine grape | cytosol, nucleus, plastid | 54.6 | 62.09 |
| VIT_02s0012g01860.t01 | Wine grape | cytosol | 54.6 | 60.99 |
| PGSC0003DMT400008196 | Potato | cytosol, mitochondrion, nucleus | 53.33 | 60.43 |
| PGSC0003DMT400038377 | Potato | cytosol | 53.65 | 60.14 |
| Solyc03g097110.2.1 | Tomato | nucleus | 53.02 | 60.07 |
| KRH74377 | Soybean | endoplasmic reticulum | 53.02 | 59.86 |
| Solyc08g076530.2.1 | Tomato | plastid | 53.33 | 59.79 |
| Zm00001d031493_P001 | Maize | cytosol, mitochondrion, plastid | 61.59 | 59.69 |
| KRH39571 | Soybean | nucleus | 52.7 | 59.29 |
| GSMUA_Achr8P14700_001 | Banana | plastid | 56.19 | 58.03 |
| CDY01476 | Canola | cytosol | 26.03 | 57.34 |
| TraesCS7D01G027100.1 | Wheat | plastid | 47.94 | 56.77 |
| GSMUA_Achr5P14070_001 | Banana | cytosol, nucleus, plastid | 49.84 | 56.47 |
| CDY01477 | Canola | cytosol | 52.38 | 54.46 |
| AT5G46870.1 | Thale cress | nucleus | 50.79 | 54.24 |
| CDX78795 | Canola | nucleus | 51.75 | 53.8 |
| CDX90453 | Canola | cytosol | 52.7 | 53.72 |
| Bra040177.1-P | Field mustard | nucleus | 51.43 | 53.64 |
| Bra012646.1-P | Field mustard | nucleus | 53.02 | 53.53 |
| AT4G17720.1 | Thale cress | cytosol, nucleus, plastid | 53.02 | 53.35 |
| CDY60787 | Canola | nucleus | 51.11 | 53.14 |
| Bra006373.1-P | Field mustard | cytosol | 42.54 | 51.34 |
| CDX70721 | Canola | cytosol | 42.54 | 51.34 |
| CDX78713 | Canola | cytosol | 42.54 | 51.34 |
| AT5G16840.2 | Thale cress | nucleus | 42.22 | 51.15 |
| Bra023585.1-P | Field mustard | nucleus | 40.95 | 50.99 |
| CDX69415 | Canola | cytosol | 41.9 | 50.77 |
| TraesCS4D01G049200.1 | Wheat | cytosol, nucleus, plastid | 45.08 | 50.0 |
| Bra008589.1-P | Field mustard | cytosol | 41.59 | 50.0 |
| CDY01473 | Canola | nucleus | 30.79 | 48.99 |
| KRH24024 | Soybean | nucleus | 45.4 | 48.97 |
| Bra024988.1-P | Field mustard | vacuole | 51.43 | 48.65 |
| CDX77703 | Canola | endoplasmic reticulum, extracellular, golgi, nucleus, plasma membrane, vacuole | 51.43 | 48.36 |
| CDY33486 | Canola | endoplasmic reticulum, extracellular, golgi, plasma membrane, vacuole | 51.11 | 48.35 |
| Bra012647.1-P | Field mustard | cytosol | 31.43 | 47.6 |
| CDX90455 | Canola | cytosol | 31.43 | 47.6 |
| TraesCS6D01G249000.1 | Wheat | nucleus, plastid | 55.24 | 45.55 |
| CDY16974 | Canola | plastid | 41.9 | 41.51 |
| PGSC0003DMT400069547 | Potato | nucleus | 44.76 | 41.47 |
| TraesCS5D01G397700.2 | Wheat | cytosol | 35.87 | 40.79 |
| CDX85485 | Canola | plastid | 40.63 | 40.63 |
| Solyc06g072770.2.1 | Tomato | nucleus | 44.76 | 38.74 |
| TraesCS2D01G523400.1 | Wheat | nucleus | 24.76 | 31.97 |
| CDY38083 | Canola | nucleus | 40.32 | 30.31 |
Protein Annotations
| EnsemblPlants:TraesCS2D01G444000.1 | EnsemblPlantsGene:TraesCS2D01G444000 | Gene3D:3.30.70.330 | GO:GO:0003674 | GO:GO:0003676 | GO:GO:0005488 |
| InterPro:IPR000504 | InterPro:IPR012677 | InterPro:Nucleotide-bd_a/b_plait_sf | InterPro:RBD_domain_sf | InterPro:RRM_dom | PANTHER:PTHR44136 |
| PANTHER:PTHR44136:SF5 | PFAM:PF00076 | PFscan:PS50102 | SEG:seg | SMART:SM00360 | SUPFAM:SSF54928 |
| MapMan:35.1 | : | : | : | : | : |
Description
No Description!
Coordinates
chr2D:+:555218879..555222494
Molecular Weight (calculated)
33216.5 Da
IEP (calculated)
4.740
GRAVY (calculated)
-0.133
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MATSTLSTVM VSNLSLKAAL RDVKEFFSFS GDLVHVEMQS GDELSQVAYI TFKDKQGAET AMLLTGATIV DMAVIVTPAT DYELPADILA ALEPKDAKSS
101: ALEKAEDIVG TMLAKGFILG RDALDKAKAL DEKHQLTSTA TARVSSFDKR IGLSEKISVG TSVVNDKVKE MDQKYLVSEK TRSALAAAEQ GVSTAGSAIM
201: KNRYVLTGAA WVTGAFSKVA NTANDVGAKA KEKIAAEQEG KTVAAGYAQA DMSDAHEKPR DLDGEITKIH VSENPEDIPI STAAVFPITV EDSSDASPPP
301: PAAPKKPEPA QGLIL
101: ALEKAEDIVG TMLAKGFILG RDALDKAKAL DEKHQLTSTA TARVSSFDKR IGLSEKISVG TSVVNDKVKE MDQKYLVSEK TRSALAAAEQ GVSTAGSAIM
201: KNRYVLTGAA WVTGAFSKVA NTANDVGAKA KEKIAAEQEG KTVAAGYAQA DMSDAHEKPR DLDGEITKIH VSENPEDIPI STAAVFPITV EDSSDASPPP
301: PAAPKKPEPA QGLIL
001: MTMTTVKVSN VSLGATDRDL KEFFSFSGDI LYLETQSETE RTKLAYVTFK DLQGAETAVL LSGATIVDSS VIVSMAPDYQ LSPEALASLE PKDSNKSPKA
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
101: GDSVLRKAED VVSSMLAKGF ILGKDAIAKA KSVDEKHQLT STASAKVASF DKKIGFTDKI NTGTVVVGEK VREVDQKYQV SEKTKSAIAA AEQTVSNAGS
201: AIMKNRYVLT GATWVTGAFN KVAKAAEEVG QKAKEKVGMA EEEDKRKVVD EFARVHLSES PKAASSTQEA ERESKLSESP EAKKDSEHLE PQSKPLQQQS
301: PPPMASAPAP AQP
Arabidopsis Description
Putative RRM-containing protein [Source:UniProtKB/TrEMBL;Acc:Q8LA96]
SUBAcon: [plastid,nucleus,cytosol]
SUBAcon: [plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.