Factsheet for TraesCS3A01G247000.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS3A01G185700.1
TraesCS3B01G215300.1
TraesCS3D01G189700.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	TraesCS3A01G185700.1	AT3G06540.1	21798944
AT5G60860.1	TraesCS3B01G215300.1	AT3G06540.1	21798944
AT5G60860.1	TraesCS3D01G189700.1	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3D01G244500.1	Wheat	cytosol	100.0	100.0
OQU87300	Sorghum	cytosol	88.53	88.13
Zm00001d043935_P001	Maize	cytosol	87.61	86.82
TraesCS5A01G184100.1	Wheat	golgi, plastid	82.11	82.87
TraesCS7A01G285200.1	Wheat	cytosol	80.28	81.02
TraesCS1A01G398400.1	Wheat	cytosol	79.82	80.56
KRH30863	Soybean	cytosol	79.82	80.18
KRH20359	Soybean	cytosol, endoplasmic reticulum	79.82	80.18
AT5G60860.1	Thale cress	cytosol	79.82	80.18
VIT_10s0003g00550.t01	Wine grape	cytosol	79.36	79.72
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	78.44	78.8
KRH50137	Soybean	cytosol, mitochondrion	78.44	78.8
Bra030105.1-P	Field mustard	cytosol	78.44	78.44
CDX94631	Canola	cytosol	78.44	78.44
VIT_19s0014g01820.t01	Wine grape	cytosol	77.98	78.34
Os05t0564400-02	Rice	plasma membrane	77.98	78.34
CDX75804	Canola	cytosol	77.98	77.98
CDY15659	Canola	cytosol	77.98	77.98
Bra001581.1-P	Field mustard	cytosol	77.98	77.98
CDX82451	Canola	cytosol	77.98	77.98
AT3G15060.1	Thale cress	cytosol	77.52	77.88
PGSC0003DMT400024319	Potato	cytosol	77.52	77.88
PGSC0003DMT400020208	Potato	cytosol	77.52	77.88
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	77.52	77.88
Solyc07g053480.2.1	Tomato	cytosol, plastid	77.52	77.88
CDX90160	Canola	cytosol	76.61	77.67
Bra010860.1-P	Field mustard	cytosol	76.61	77.67
CDY35757	Canola	cytosol	77.52	77.52
Bra032914.1-P	Field mustard	cytosol	77.52	77.52
CDY34094	Canola	cytosol	77.52	77.52
CDY30818	Canola	cytosol	77.52	77.52
KRH25681	Soybean	cytosol	77.06	77.42
PGSC0003DMT400033395	Potato	cytosol	76.61	77.31
Solyc03g006270.2.1	Tomato	cytosol	76.61	77.31
AT1G28550.1	Thale cress	cytosol	77.06	77.06
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	76.61	76.96
KRH55839	Soybean	endoplasmic reticulum	76.61	76.96
Solyc12g014080.1.1	Tomato	cytosol	76.61	76.96
PGSC0003DMT400058784	Potato	cytosol	75.69	76.74
Solyc10g008840.2.1	Tomato	cytosol	75.69	76.74
VIT_12s0028g02650.t01	Wine grape	cytosol	75.23	75.93
AT2G33870.1	Thale cress	cytosol	75.23	75.23
Bra021589.1-P	Field mustard	cytosol	75.23	75.23
CDY20100	Canola	cytosol	75.23	75.23
AT4G18430.1	Thale cress	cytosol	74.77	75.12
CDX76522	Canola	cytosol	74.31	74.65
TraesCS7A01G354400.1	Wheat	golgi	74.31	74.65
Bra021009.1-P	Field mustard	cytosol	73.85	74.19
CDX79548	Canola	cytosol	66.97	74.11
Bra022959.1-P	Field mustard	cytosol	73.85	73.85
GSMUA_Achr7P14790_001	Banana	cytosol	64.68	73.44
CDY55638	Canola	cytosol	72.94	73.27
CDY01540	Canola	cytosol	72.94	73.27
KRH27001	Soybean	cytosol, endoplasmic reticulum	72.94	72.94
Bra012597.1-P	Field mustard	cytosol	72.48	72.81
KRH22324	Soybean	cytosol, endoplasmic reticulum	72.02	72.02
TraesCS3A01G289600.1	Wheat	cytosol	67.89	66.97
CDY60884	Canola	cytosol	68.35	66.82
TraesCS4A01G343500.1	Wheat	cytosol	65.6	63.56
TraesCS3A01G364100.1	Wheat	cytosol	62.84	63.43
TraesCS3B01G272300.1	Wheat	cytosol	100.0	63.01
TraesCS5A01G485100.1	Wheat	cytosol, golgi	61.93	62.79
TraesCS1A01G015400.1	Wheat	cytosol	63.76	62.33
TraesCS1A01G131500.2	Wheat	cytosol	57.34	57.87
TraesCS5A01G176000.1	Wheat	cytosol	59.17	57.08
GSMUA_Achr7P10970_001	Banana	cytosol	64.68	55.73
TraesCS5A01G315700.1	Wheat	cytosol	54.13	47.77

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF872	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS3A01G247000
EnsemblPlants:TraesCS3A01G247000.1	TIGR:cd01868	:	:	:	:

Description

No Description!

Coordinates

chr3A:+:464914374..464915437

Molecular Weight (calculated)

24056.3 Da

IEP (calculated)

5.179

GRAVY (calculated)

-0.252

Length

218 amino acids

Sequence
(BLAST)

001: MAVAYRAEEE YDYLFKVVLI GDSGVGKSNL LSRFARDEFS LDTRSTIGVE FATKTVRVDG KLVKAQIWDT AGQERYRAIT SAYYRGAVGA LVVYDVTRHI
101: TFENAERWLT ELRDHTDANI VVMLVGNKAD LRHLRAVSPE EARAFAERHR TFSMETSALE ATNVEDAFTE VLGEIYRVVS KKALDIGDDP AAPPRGKTID
201: VGGKDDVTPV NTGGCCSA

Best Arabidopsis Sequence Match ( AT1G28550.1 )
(BLAST)

001: MGAYRAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSH DSRATIGVEF ATRSIQCDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTEE AKAFAERENT FFMETSALEA VNVDNAFTEV LTQIYRVVSK KALEAGDDPT TALPKGQMIN
201: VGGRDDISAV KKPGCCSA

Arabidopsis Description

RABA1IRas-related protein RABA1i [Source:UniProtKB/Swiss-Prot;Acc:Q9S810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.