CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
KXG32246

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	KXG32246	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d043935_P001	Maize	cytosol	96.35	95.91
TraesCS3D01G244500.1	Wheat	cytosol	88.13	88.53
TraesCS3A01G247000.1	Wheat	cytosol	88.13	88.53
AT5G60860.1	Thale cress	cytosol	77.17	77.88
OQU89311	Sorghum	cytosol	76.71	77.78
VIT_10s0003g00550.t01	Wine grape	cytosol	76.71	77.42
KRH20359	Soybean	cytosol, endoplasmic reticulum	76.26	76.96
EES19950	Sorghum	cytosol	75.34	76.39
KRH50137	Soybean	cytosol, mitochondrion	75.34	76.04
VIT_19s0014g01820.t01	Wine grape	cytosol	75.34	76.04
KRH30863	Soybean	cytosol	75.34	76.04
KRH25681	Soybean	cytosol	75.34	76.04
Os05t0564400-02	Rice	plasma membrane	75.34	76.04
KRH55839	Soybean	endoplasmic reticulum	75.34	76.04
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	74.43	75.12
Solyc12g014080.1.1	Tomato	cytosol	73.97	74.65
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	73.97	74.65
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	73.97	74.65
Solyc07g053480.2.1	Tomato	cytosol, plastid	73.97	74.65
PGSC0003DMT400020208	Potato	cytosol	73.97	74.65
PGSC0003DMT400024319	Potato	cytosol	73.97	74.65
PGSC0003DMT400033395	Potato	cytosol	73.52	74.54
Solyc03g006270.2.1	Tomato	cytosol	73.52	74.54
AT3G15060.1	Thale cress	cytosol	73.52	74.19
PGSC0003DMT400058784	Potato	cytosol	72.6	73.95
CDX82451	Canola	cytosol	73.52	73.85
CDX75804	Canola	cytosol	73.52	73.85
Bra001581.1-P	Field mustard	cytosol	73.52	73.85
VIT_12s0028g02650.t01	Wine grape	cytosol	72.6	73.61
CDX90160	Canola	cytosol	71.69	73.02
Bra010860.1-P	Field mustard	cytosol	71.69	73.02
Solyc10g008840.2.1	Tomato	cytosol	71.69	73.02
AT1G28550.1	Thale cress	cytosol	72.6	72.94
CDY34094	Canola	cytosol	72.6	72.94
CDY30818	Canola	cytosol	72.6	72.94
Bra032914.1-P	Field mustard	cytosol	72.6	72.94
CDY35757	Canola	cytosol	72.15	72.48
CDX94631	Canola	cytosol	72.15	72.48
Bra030105.1-P	Field mustard	cytosol	72.15	72.48
EER89913	Sorghum	cytosol	71.69	72.35
CDX76522	Canola	cytosol	71.69	72.35
CDY20100	Canola	cytosol	71.69	72.02
CDY15659	Canola	cytosol	71.69	72.02
KRH27001	Soybean	cytosol, endoplasmic reticulum	71.69	72.02
Bra021589.1-P	Field mustard	cytosol	71.69	72.02
Bra021009.1-P	Field mustard	cytosol	71.23	71.89
AT4G18430.1	Thale cress	cytosol	71.23	71.89
AT2G33870.1	Thale cress	cytosol	70.78	71.1
Bra022959.1-P	Field mustard	cytosol	70.78	71.1
CDX79548	Canola	cytosol	63.93	71.07
KRH22324	Soybean	cytosol, endoplasmic reticulum	70.32	70.64
CDY01540	Canola	cytosol	69.41	70.05
CDY55638	Canola	cytosol	69.41	70.05
EES19812	Sorghum	cytosol	70.32	70.0
Bra012597.1-P	Field mustard	cytosol	68.95	69.59
GSMUA_Achr7P14790_001	Banana	cytosol	60.73	69.27
CDY60884	Canola	cytosol	66.67	65.47
EER98344	Sorghum	cytosol	64.38	63.23
KXG37238	Sorghum	cytosol	61.19	62.33
OQU77196	Sorghum	cytosol	62.1	61.82
EES17935	Sorghum	cytosol	58.9	59.45
EER90540	Sorghum	cytosol	62.56	58.05
TraesCS3B01G272300.1	Wheat	cytosol	88.13	55.78
EER96479	Sorghum	cytosol	57.08	55.31
EER92725	Sorghum	cytosol	54.79	55.3
OQU91938	Sorghum	cytosol	54.79	55.3
GSMUA_Achr7P10970_001	Banana	cytosol	61.19	52.96
EER90389	Sorghum	cytosol	45.66	47.85
EER97073	Sorghum	cytosol	53.88	46.09

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:8080822	UniProt:A0A1W0VYU6	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlants:OQU87300
ProteinID:OQU87300	ProteinID:OQU87300.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF872	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
EnsemblPlantsGene:SORBI_3003G250340	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A845D1
RefSeq:XP_002456111.1	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr3:+:58870755..58873665

Molecular Weight (calculated)

24125.3 Da

IEP (calculated)

5.158

GRAVY (calculated)

-0.258

Length

219 amino acids

Sequence
(BLAST)

001: MASGYRAEEE YDYLFKVVLI GDSGVGKSNL LSRFARDEFS LETRSTIGVE FATKTVQVDD KLVKAQIWDT AGQERYRAIT SAYYRGAVGA LVVYDVTRRI
101: TFDNAERWLR ELRDHTDANI VVMLVGNKAD LRHLRAVTPE DAAAFAERHG TFSMETSALD ATNVDRAFAE VLRQIYHVVS RNALDIGEDP AAPPRGKTID
201: VGAAKDEVSP VNTGGCCSA

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.