CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 4
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER89059
EES12769
KXG26318
OQU85574
OQU90665

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	KXG26318	AT2G23420.1	21798944
AT1G09630.1	OQU90665	AT2G23420.1	21798944
AT1G09630.1	EER89059	AT4G17720.1	21798944
AT1G09630.1	EES12769	AT4G17720.1	21798944
AT1G09630.1	OQU85574	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d034802_P001	Maize	cytosol	87.29	88.03
Zm00001d034803_P001	Maize	cytosol	86.44	87.18
Os03t0843100-01	Rice	cytosol	70.76	74.89
TraesCS5B01G530800.1	Wheat	cytosol	69.49	73.54
TraesCS5D01G529500.1	Wheat	cytosol	69.92	73.33
TraesCS4A01G343500.1	Wheat	cytosol	69.07	72.44
EER98344	Sorghum	cytosol	66.53	70.4
VIT_12s0035g01140.t01	Wine grape	extracellular	60.59	66.51
KRH26288	Soybean	endoplasmic reticulum	61.02	66.36
GSMUA_Achr2P05630_001	Banana	cytosol	60.17	66.05
CDY50888	Canola	cytosol	60.59	65.9
Bra020006.1-P	Field mustard	cytosol	60.17	65.44
CDX93495	Canola	cytosol	60.17	65.44
Solyc01g103380.2.1	Tomato	nucleus	59.32	65.42
PGSC0003DMT400064102	Potato	cytosol	59.32	65.42
EES19950	Sorghum	cytosol	59.75	65.28
KRH06049	Soybean	endoplasmic reticulum	59.75	65.28
KXG37238	Sorghum	cytosol	59.32	65.12
EES19812	Sorghum	cytosol	60.59	65.0
GSMUA_Achr6P28910_001	Banana	cytosol	59.75	64.98
EER89913	Sorghum	cytosol	59.75	64.98
GSMUA_Achr6P18430_001	Banana	cytosol	61.86	64.89
Solyc10g045550.1.1	Tomato	nucleus	58.9	64.65
AT1G09630.1	Thale cress	cytosol	59.32	64.52
OQU89311	Sorghum	cytosol	58.9	64.35
OQU77196	Sorghum	cytosol	59.75	64.09
EES17935	Sorghum	cytosol	58.9	64.06
OQU87300	Sorghum	cytosol	58.05	62.56
OQU91938	Sorghum	cytosol	52.97	57.6
EER96479	Sorghum	cytosol	54.24	56.64
EER92725	Sorghum	cytosol	50.42	54.84
PGSC0003DMT400045950	Potato	cytosol	58.47	54.12
HORVU5Hr1G120210.4	Barley	plastid	67.8	50.63
EER90389	Sorghum	cytosol	42.37	47.85
EER97073	Sorghum	cytosol	50.42	46.48

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:8080167	UniProt:C5WT11	EnsemblPlants:EER90540	ProteinID:EER90540
ProteinID:EER90540.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF564	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3001G017400
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A82550	RefSeq:XP_002463542.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr1:+:1493296..1494703

Molecular Weight (calculated)

25351.8 Da

IEP (calculated)

8.648

GRAVY (calculated)

-0.235

Length

236 amino acids

Sequence
(BLAST)

001: MSGRRPATWE QQAADDYDYL FKVVLVGDSG VGKSNLLSRF TRNTFSLDSK STIGVEFATR TIQVDGKTIK AQIWDTAGQE RYRAVTSAYY RGAVGALLVY
101: DVTKSATFGN AARWLRELRD HADGRGTAVM LVGNKTDLAK QRGGLRAVPR GDGAALAERE GLSFVETSAL DATNVDAAFV TLLTEIYRAV RRKALAAAAA
201: DNKEDDEVAA AVGEGQVIQV SSPGDSRGLT TRCCAF

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.