Subcellular Localization
min:
: max
Winner_takes_all: nucleus
Predictor Summary:
Predictor Summary:
- nucleus 1
- plastid 2
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| nucleus:
28394025
|
msms PMID:
28394025
doi
Cell and Molecular Sciences, JHI, Invergowrie, Dundee, DD2 5DA, UK., Division of Plant Science, School of Life Sciences, University of Dundee at the James Hutton Institute (JHI), Invergowrie, Dundee, DD2 5DA, UK., Dundee Effector Consortium, JHI, Invergowrie, Dundee, DD2 5DA, UK., Section of Population Genetics, Technische Universität München, 85354, Freising, Germany., Wellcome Trust Centre for Gene Regulation and Expression, School of Life Sciences, University of Dundee, Dow Street, Dundee, DD1 5EH, UK.
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400064102 | Potato | cytosol | 99.53 | 99.53 |
| VIT_12s0035g01140.t01 | Wine grape | extracellular | 90.65 | 90.23 |
| Solyc10g045550.1.1 | Tomato | nucleus | 90.65 | 90.23 |
| GSMUA_Achr2P05630_001 | Banana | cytosol | 84.58 | 84.19 |
| GSMUA_Achr6P28910_001 | Banana | cytosol | 85.05 | 83.87 |
| OQU77196 | Sorghum | cytosol | 82.71 | 80.45 |
| Os05t0105100-01 | Rice | golgi, plasma membrane | 80.37 | 78.18 |
| GSMUA_Achr6P18430_001 | Banana | cytosol | 81.78 | 77.78 |
| HORVU1Hr1G001920.2 | Barley | cytosol | 80.84 | 76.89 |
| TraesCS1B01G018900.1 | Wheat | cytosol | 78.5 | 75.34 |
| TraesCS1D01G013300.1 | Wheat | cytosol | 78.04 | 74.89 |
| TraesCS1A01G015400.1 | Wheat | cytosol | 77.57 | 74.44 |
| Zm00001d005495_P001 | Maize | extracellular, mitochondrion, plasma membrane | 77.1 | 73.99 |
| EER98344 | Sorghum | cytosol | 76.64 | 73.54 |
| Os03t0843100-01 | Rice | cytosol | 76.17 | 73.09 |
| Solyc06g005810.2.1 | Tomato | cytosol, unclear | 73.36 | 72.69 |
| Solyc03g079900.2.1 | Tomato | cytosol | 72.43 | 72.09 |
| Solyc05g052900.2.1 | Tomato | cytosol | 72.43 | 72.09 |
| Solyc06g076450.2.1 | Tomato | plastid | 72.43 | 72.09 |
| TraesCS5B01G530800.1 | Wheat | cytosol | 74.3 | 71.3 |
| TraesCS4A01G343500.1 | Wheat | cytosol | 74.3 | 70.67 |
| TraesCS5D01G529500.1 | Wheat | cytosol | 73.83 | 70.22 |
| Solyc07g053480.2.1 | Tomato | cytosol, plastid | 71.03 | 70.05 |
| Solyc12g010790.1.1 | Tomato | cytosol, nucleus, unclear | 69.63 | 68.66 |
| Solyc07g055290.2.1 | Tomato | plastid | 67.76 | 66.51 |
| Solyc12g014080.1.1 | Tomato | cytosol | 67.29 | 66.36 |
| Solyc02g072180.2.1 | Tomato | cytosol | 67.29 | 66.36 |
| Solyc10g008840.2.1 | Tomato | cytosol | 66.36 | 66.05 |
| Solyc03g006270.2.1 | Tomato | cytosol | 65.42 | 64.81 |
| Zm00001d034802_P001 | Maize | cytosol | 66.82 | 61.11 |
| Solyc04g012180.2.1 | Tomato | cytosol, unclear | 62.62 | 60.36 |
| Zm00001d034803_P001 | Maize | cytosol | 65.89 | 60.26 |
| Solyc11g010100.1.1 | Tomato | cytosol | 62.62 | 59.82 |
| EER90540 | Sorghum | cytosol | 65.42 | 59.32 |
| Solyc01g086850.2.1 | Tomato | cytosol | 61.68 | 58.67 |
| Solyc03g064020.2.1 | Tomato | cytosol | 61.22 | 58.48 |
| Solyc10g079030.1.1 | Tomato | plastid | 59.81 | 56.64 |
| Solyc01g096220.2.1 | Tomato | plastid | 57.94 | 51.03 |
| HORVU5Hr1G120210.4 | Barley | plastid | 75.23 | 50.95 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0000911 | GO:GO:0003674 | GO:GO:0003824 |
| GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 |
| GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005829 | GO:GO:0005886 | GO:GO:0007049 | GO:GO:0008150 |
| GO:GO:0009504 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016787 | UniProt:K4B1R4 | InterPro:P-loop_NTPase |
| PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF613 | SMART:SM00173 |
| SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase |
| EnsemblPlantsGene:Solyc01g103380.2 | EnsemblPlants:Solyc01g103380.2.1 | TIGRFAMs:TIGR00231 | UniParc:UPI000276822F | : | : |
Description
No Description!
Coordinates
chr1:-:91995157..91998149
Molecular Weight (calculated)
23804.3 Da
IEP (calculated)
6.554
GRAVY (calculated)
-0.291
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MARRAEEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFLLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSFAEKEGLS FIETSALEAT NVEKSFQTIL SEIYRIISKK PLSSEEPANA NIKEGKTLVV
201: GAEEPAPKKA CCSA
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSFAEKEGLS FIETSALEAT NVEKSFQTIL SEIYRIISKK PLSSEEPANA NIKEGKTLVV
201: GAEEPAPKKA CCSA
001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS
Arabidopsis Description
RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.