Factsheet for Solyc07g055290.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

plastid: 26371478

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22259	Soybean	cytosol, nucleus	84.86	84.86
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	84.86	84.86
Solyc02g072180.2.1	Tomato	cytosol	80.28	80.65
AT1G06400.1	Thale cress	cytosol	78.9	79.63
Solyc07g053480.2.1	Tomato	cytosol, plastid	78.44	78.8
Bra032424.1-P	Field mustard	cytosol	79.36	77.58
CDY06210	Canola	cytosol	79.36	77.58
CDY09976	Canola	cytosol	78.9	77.13
Solyc12g014080.1.1	Tomato	cytosol	76.61	76.96
Solyc03g006270.2.1	Tomato	cytosol	76.15	76.85
Solyc10g008840.2.1	Tomato	cytosol	75.23	76.28
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	75.23	75.58
Solyc06g076450.2.1	Tomato	plastid	66.97	67.91
Solyc10g045550.1.1	Tomato	nucleus	66.97	67.91
Solyc01g103380.2.1	Tomato	nucleus	66.51	67.76
Solyc06g005810.2.1	Tomato	cytosol, unclear	66.97	67.59
Solyc05g052900.2.1	Tomato	cytosol	66.51	67.44
Solyc03g079900.2.1	Tomato	cytosol	65.14	66.05
Solyc01g086850.2.1	Tomato	cytosol	59.63	57.78
Solyc03g064020.2.1	Tomato	cytosol	59.17	57.59
Solyc11g010100.1.1	Tomato	cytosol	59.17	57.59
Solyc04g012180.2.1	Tomato	cytosol, unclear	57.34	56.31
Solyc10g079030.1.1	Tomato	plastid	57.8	55.75
Solyc01g096220.2.1	Tomato	plastid	53.67	48.15

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005886	GO:GO:0008150	GO:GO:0009719	GO:GO:0009733	GO:GO:0009987
GO:GO:0016020	GO:GO:0016787	GO:GO:0042546	UniProt:K4CG68	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF544	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc07g055290.2
EnsemblPlants:Solyc07g055290.2.1	TIGRFAMs:TIGR00231	UniParc:UPI000276CA1F	:	:	:

Description

Ras-related protein RABA1a [Source:Projected from Arabidopsis thaliana (AT1G06400) UniProtKB/Swiss-Prot;Acc:P28185]

Coordinates

chr7:-:63373504..63378793

Molecular Weight (calculated)

24165.5 Da

IEP (calculated)

5.801

GRAVY (calculated)

-0.316

Length

218 amino acids

Sequence
(BLAST)

001: MAGYRGDDEY DYLFKLVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATKSLNIDGK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVNRWLKE LRDHTDPNIV VMLLGNKSDL RHLVAVSTEE AKSLAEREAL YFMETSALEA TNVENAFTEA LTQIYRIVSK KAVEAGDEGA TSTAPPKGQT
201: INIKDEGSAW KKFGCCSS

Best Arabidopsis Sequence Match ( AT1G06400.1 )
(BLAST)

001: MAGYRADEEY DYLFKLVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATKTTKVEGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LIYDVTRHAT
101: FENAARWLRE LRGHTDPNIV VMLIGNKCDL RHLVAVKTEE AKAFAERESL YFMETSALDA TNVENAFTEV LTQIHKIVSK RSVDGGGESA DLPGKGETIN
201: VKEDGSVLKR MGCCSN

Arabidopsis Description

RABA1ARas-related protein RABA1a [Source:UniProtKB/Swiss-Prot;Acc:P28185]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.