Factsheet for Solyc02g072180.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082730.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G18800.1	Solyc02g082730.2.1	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400073077	Potato	cytosol	100.0	100.0
AT4G18800.1	Thale cress	cytosol	88.48	89.72
CDX99430	Canola	cytosol	87.1	88.32
AT5G45750.1	Thale cress	cytosol	87.1	87.5
CDX87774	Canola	cytosol	85.71	86.11
CDY62557	Canola	cytosol	84.79	85.58
CDY64916	Canola	cytosol	84.79	85.58
Solyc07g053480.2.1	Tomato	cytosol, plastid	80.65	80.65
Solyc07g055290.2.1	Tomato	plastid	80.65	80.28
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	79.72	79.72
Solyc12g014080.1.1	Tomato	cytosol	78.8	78.8
Solyc03g006270.2.1	Tomato	cytosol	75.58	75.93
Solyc10g008840.2.1	Tomato	cytosol	74.65	75.35
Solyc01g103380.2.1	Tomato	nucleus	66.36	67.29
Solyc06g005810.2.1	Tomato	cytosol, unclear	65.44	65.74
Solyc10g045550.1.1	Tomato	nucleus	64.52	65.12
Solyc06g076450.2.1	Tomato	plastid	64.06	64.65
Solyc03g079900.2.1	Tomato	cytosol	63.59	64.19
Solyc05g052900.2.1	Tomato	cytosol	63.59	64.19
Solyc01g086850.2.1	Tomato	cytosol	60.37	58.22
Solyc11g010100.1.1	Tomato	cytosol	59.91	58.04
Solyc04g012180.2.1	Tomato	cytosol, unclear	58.06	56.76
Solyc10g079030.1.1	Tomato	plastid	58.06	55.75
Solyc03g064020.2.1	Tomato	cytosol	56.68	54.91
Solyc01g096220.2.1	Tomato	plastid	56.68	50.62

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0016787	UniProt:K4B8J2	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF592	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc02g072180.2	EnsemblPlants:Solyc02g072180.2.1
TIGRFAMs:TIGR00231	UniParc:UPI0001EE9997	:	:	:	:

Description

No Description!

Coordinates

chr2:+:41496822..41503133

Molecular Weight (calculated)

24088.3 Da

IEP (calculated)

5.407

GRAVY (calculated)

-0.375

Length

217 amino acids

Sequence
(BLAST)

001: MAGYRAEDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATKSLTVDSK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVERWLKE LRDHTDPNIV VMLVGNKSDL RHLVAVSTED GKSFAEKESL YYMETSALES TNVENAFAEV LTQIYHVVSR KAMENGENGN GNVPSKGEKI
201: DIGKEVSDVK KAGCCSS

Best Arabidopsis Sequence Match ( AT4G18800.1 )
(BLAST)

001: MAGYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSLNVNEK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVERWLRE LRDHTDPNIV VMLVGNKSDL RHLVAVQTED AKSFAENESL YFMETSALES TNVENAFSEV LTQIYHVVSK KAMEAGEDSG NVPSKGEKID
201: VDVSAVKKTG CCSN

Arabidopsis Description

RABA1DRABA1d [Source:UniProtKB/TrEMBL;Acc:A0A178V3A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.