Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT4G18800.1 | CDY05274 | AT3G06540.1 | 21798944 |
| AT4G18800.1 | CDY24684 | AT3G06540.1 | 21798944 |
| AT4G18800.1 | CDY34947 | AT3G06540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY62557 | Canola | cytosol | 97.2 | 96.74 |
| CDY64916 | Canola | cytosol | 97.2 | 96.74 |
| AT4G18800.1 | Thale cress | cytosol | 95.79 | 95.79 |
| CDX87774 | Canola | cytosol | 89.72 | 88.89 |
| Solyc02g072180.2.1 | Tomato | cytosol | 88.32 | 87.1 |
| PGSC0003DMT400073077 | Potato | cytosol | 88.32 | 87.1 |
| CDY35128 | Canola | cytosol | 82.71 | 81.94 |
| CDY40023 | Canola | cytosol | 81.78 | 81.02 |
| CDX96799 | Canola | cytosol | 81.31 | 80.56 |
| CDX90160 | Canola | cytosol | 77.57 | 77.21 |
| CDX82451 | Canola | cytosol | 78.04 | 76.61 |
| CDY34094 | Canola | cytosol | 78.04 | 76.61 |
| CDY30818 | Canola | cytosol | 78.04 | 76.61 |
| CDY35757 | Canola | cytosol | 77.57 | 76.15 |
| CDY20100 | Canola | cytosol | 77.57 | 76.15 |
| CDX75804 | Canola | cytosol | 77.1 | 75.69 |
| CDY15659 | Canola | cytosol | 77.1 | 75.69 |
| CDX94631 | Canola | cytosol | 77.1 | 75.69 |
| CDX79548 | Canola | cytosol | 69.16 | 75.13 |
| CDX76522 | Canola | cytosol | 75.7 | 74.65 |
| CDY01540 | Canola | cytosol | 75.23 | 74.19 |
| CDY55638 | Canola | cytosol | 75.23 | 74.19 |
| CDY06210 | Canola | cytosol | 77.1 | 73.99 |
| CDY09976 | Canola | cytosol | 76.64 | 73.54 |
| CDY60884 | Canola | cytosol | 71.03 | 68.16 |
| CDY09919 | Canola | cytosol | 67.76 | 67.76 |
| CDY06256 | Canola | cytosol | 67.76 | 67.76 |
| CDY06703 | Canola | cytosol | 68.22 | 67.59 |
| CDY02867 | Canola | cytosol | 67.29 | 66.36 |
| CDY71720 | Canola | cytosol | 67.29 | 66.36 |
| CDY32661 | Canola | cytosol | 67.29 | 66.36 |
| CDX81790 | Canola | plastid | 82.24 | 65.92 |
| CDY33014 | Canola | cytosol | 66.82 | 65.9 |
| CDY50888 | Canola | cytosol | 66.82 | 65.9 |
| CDX93495 | Canola | cytosol | 66.36 | 65.44 |
| CDX96994 | Canola | cytosol | 62.15 | 59.64 |
| CDX69843 | Canola | cytosol | 61.68 | 59.19 |
| CDY54519 | Canola | cytosol | 60.75 | 58.3 |
| CDY00758 | Canola | cytosol | 59.81 | 57.92 |
| CDX73833 | Canola | cytosol | 59.81 | 57.92 |
| CDX86332 | Canola | cytosol | 60.28 | 57.85 |
| CDY52622 | Canola | cytosol | 59.35 | 57.21 |
| CDY50568 | Canola | cytosol | 59.35 | 57.21 |
| CDY18682 | Canola | cytosol | 59.81 | 56.89 |
| CDY42133 | Canola | cytosol | 58.88 | 56.76 |
| CDY08447 | Canola | cytosol | 58.88 | 56.76 |
| CDY69836 | Canola | cytosol | 58.88 | 56.25 |
| CDX81274 | Canola | cytosol | 59.35 | 55.95 |
| CDX86101 | Canola | cytosol | 66.82 | 55.86 |
| CDX80299 | Canola | cytosol | 67.29 | 55.81 |
| CDX99094 | Canola | cytosol | 66.82 | 49.83 |
| CDX90017 | Canola | cytosol | 52.34 | 47.26 |
| CDY15192 | Canola | cytosol | 52.34 | 47.26 |
| CDX69367 | Canola | cytosol | 38.78 | 45.11 |
| CDX69369 | Canola | cytosol | 58.41 | 30.64 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:A0A078EBF7 | EnsemblPlants:CDX99430 | ProteinID:CDX99430 | ProteinID:CDX99430.1 |
| GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 |
| GO:GO:0016787 | EnsemblPlantsGene:GSBRNA2T00107763001 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 |
| PANTHER:PTHR24073 | PANTHER:PTHR24073:SF544 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 |
| SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI0001EEB30E | : |
Description
BnaC01g11220D
Coordinates
chrLK031910:+:609951..611202
Molecular Weight (calculated)
23809.0 Da
IEP (calculated)
5.153
GRAVY (calculated)
-0.337
Length
214 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYKADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSLTVKDK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVERWLRE LRDHTDPNIV VMLVGNKSDL RHLIAVQTED AKSFAENESL YFMETSALES TNVENAFSEV LTQIHQVVSK KAMEAGDDSG NVPSKGEKID
201: IDVSAVKKTG CCSN
101: FENVERWLRE LRDHTDPNIV VMLVGNKSDL RHLIAVQTED AKSFAENESL YFMETSALES TNVENAFSEV LTQIHQVVSK KAMEAGDDSG NVPSKGEKID
201: IDVSAVKKTG CCSN
001: MAGYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSLNVNEK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVERWLRE LRDHTDPNIV VMLVGNKSDL RHLVAVQTED AKSFAENESL YFMETSALES TNVENAFSEV LTQIYHVVSK KAMEAGEDSG NVPSKGEKID
201: VDVSAVKKTG CCSN
101: FENVERWLRE LRDHTDPNIV VMLVGNKSDL RHLVAVQTED AKSFAENESL YFMETSALES TNVENAFSEV LTQIYHVVSK KAMEAGEDSG NVPSKGEKID
201: VDVSAVKKTG CCSN
Arabidopsis Description
RABA1DRABA1d [Source:UniProtKB/TrEMBL;Acc:A0A178V3A0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.