CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 6
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
WoLF PSORT:	plastid
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96799	Canola	cytosol	78.65	97.22
AT1G16920.1	Thale cress	cytosol	78.65	97.22
CDY35128	Canola	cytosol	78.28	96.76
CDY40023	Canola	cytosol	77.15	95.37
KRH27364	Soybean	endoplasmic reticulum	70.79	87.1
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	70.41	86.64
GSMUA_Achr9P05610_001	Banana	cytosol	67.42	83.72
GSMUA_Achr3P15680_001	Banana	plasma membrane	67.79	83.41
GSMUA_Achr4P02540_001	Banana	cytosol	59.55	82.81
CDX99430	Canola	cytosol	65.92	82.24
CDY64916	Canola	cytosol	65.92	81.86
CDY62557	Canola	cytosol	65.92	81.86
GSMUA_Achr8P27780_001	Banana	cytosol	55.06	81.67
GSMUA_Achr6P31790_001	Banana	cytosol	50.56	81.33
CDX87774	Canola	cytosol	65.17	80.56
VIT_19s0014g01160.t01	Wine grape	extracellular	75.66	80.16
EES19812	Sorghum	cytosol	65.17	79.09
TraesCS3D01G289400.1	Wheat	cytosol	65.17	78.73
TraesCS3A01G289600.1	Wheat	cytosol	64.79	78.28
TraesCS3B01G324300.1	Wheat	cytosol, golgi	64.79	78.28
CDX79548	Canola	cytosol	55.43	75.13
CDY06210	Canola	cytosol	61.8	73.99
CDY09976	Canola	cytosol	61.42	73.54
CDX75804	Canola	cytosol	59.93	73.39
CDX82451	Canola	cytosol	59.93	73.39
CDY20100	Canola	cytosol	59.55	72.94
CDX90160	Canola	cytosol	58.43	72.56
CDY34094	Canola	cytosol	59.18	72.48
CDY30818	Canola	cytosol	59.18	72.48
CDY35757	Canola	cytosol	58.43	71.56
CDY15659	Canola	cytosol	58.05	71.1
CDX94631	Canola	cytosol	58.05	71.1
CDY01540	Canola	cytosol	57.3	70.51
CDY55638	Canola	cytosol	57.3	70.51
CDX76522	Canola	cytosol	56.93	70.05
CDY02867	Canola	cytosol	55.43	68.2
CDY33014	Canola	cytosol	55.43	68.2
CDY32661	Canola	cytosol	55.43	68.2
CDY06256	Canola	cytosol	54.31	67.76
CDY09919	Canola	cytosol	54.31	67.76
CDY50888	Canola	cytosol	55.06	67.74
CDY06703	Canola	cytosol	54.31	67.13
CDX93495	Canola	cytosol	54.31	66.82
CDY71720	Canola	cytosol	53.56	65.9
HORVU3Hr1G071740.1	Barley	plastid	68.91	64.34
CDY60884	Canola	cytosol	52.81	63.23
CDY54519	Canola	cytosol	49.81	59.64
CDX86332	Canola	cytosol	49.44	59.19
CDY00758	Canola	cytosol	48.69	58.82
CDX73833	Canola	cytosol	48.69	58.82
CDX80299	Canola	cytosol	56.55	58.53
CDY52622	Canola	cytosol	48.31	58.11
CDY50568	Canola	cytosol	48.31	58.11
CDX96994	Canola	cytosol	48.31	57.85
CDY08447	Canola	cytosol	47.94	57.66
CDY42133	Canola	cytosol	47.94	57.66
CDX86101	Canola	cytosol	55.06	57.42
CDX69843	Canola	cytosol	47.94	57.4
CDY69836	Canola	cytosol	46.82	55.8
CDY18682	Canola	cytosol	46.82	55.56
CDX81274	Canola	cytosol	46.44	54.63
CDX99094	Canola	cytosol	55.06	51.22
CDY15192	Canola	cytosol	40.45	45.57
CDX90017	Canola	cytosol	40.45	45.57
CDX69367	Canola	cytosol	30.34	44.02
CDX69369	Canola	cytosol	46.44	30.39

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:A0A078CY72	EnsemblPlants:CDX81790	ProteinID:CDX81790	ProteinID:CDX81790.1
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0016787	EnsemblPlantsGene:GSBRNA2T00136730001	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF592	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0004EBD076	SEG:seg

Description

BnaC08g38110D

Coordinates

chrLK031826:-:788781..790611

Molecular Weight (calculated)

29666.1 Da

IEP (calculated)

7.427

GRAVY (calculated)

-0.360

Length

267 amino acids

Sequence
(BLAST)

001: MITTLSPPVT LTVTPSIFSS YFKSQFVYTA SLSHSLNQSS KQGSKYGRRG EMAGYKVEDD YDYLFKVVLI GDSGVGKSNL LSRFTKNEFN LESKSTIGVE
101: FATRTLKVDD KVIKAQIWDT AGQERYRAIT SAYYRGAVGA LLVYDTTRRA TFENVDRWLK ELKNHTDPNI VVMLVGNKSD LRHLLAVPTE DGKSYAEQES
201: LCFMETSALE ATNVEDAFAE VLTQIYRITS KKQVEAGEDA NGSVPKGEKI EVKNDVSALK KLGCCSN

Best Arabidopsis Sequence Match ( AT1G16920.1 )
(BLAST)

001: MAGYRVEDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLKVDGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENVDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN ASVPKGEKIE
201: VKNDVSALKK LGCCSN

Arabidopsis Description

RABA1BRABA1b [Source:UniProtKB/TrEMBL;Acc:A0A178WJV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.