Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY35128 | Canola | cytosol | 97.69 | 97.69 |
| Bra026016.1-P | Field mustard | cytosol | 97.22 | 97.22 |
| CDX96799 | Canola | cytosol | 96.76 | 96.76 |
| CDY40023 | Canola | cytosol | 96.3 | 96.3 |
| KRH27364 | Soybean | endoplasmic reticulum | 88.89 | 88.48 |
| KRH21946 | Soybean | cytosol, endoplasmic reticulum, mitochondrion, nucleus | 87.96 | 87.56 |
| GSMUA_Achr9P05610_001 | Banana | cytosol | 84.26 | 84.65 |
| GSMUA_Achr4P02540_001 | Banana | cytosol | 75.0 | 84.38 |
| GSMUA_Achr3P15680_001 | Banana | plasma membrane | 84.26 | 83.87 |
| AT4G18800.1 | Thale cress | cytosol | 82.41 | 83.18 |
| GSMUA_Achr8P27780_001 | Banana | cytosol | 68.52 | 82.22 |
| AT5G45750.1 | Thale cress | cytosol | 81.94 | 81.94 |
| GSMUA_Achr6P31790_001 | Banana | cytosol | 62.96 | 81.93 |
| TraesCS3D01G289400.1 | Wheat | cytosol | 82.87 | 81.0 |
| EES19812 | Sorghum | cytosol | 82.41 | 80.91 |
| TraesCS3A01G289600.1 | Wheat | cytosol | 82.41 | 80.54 |
| TraesCS3B01G324300.1 | Wheat | cytosol, golgi | 82.41 | 80.54 |
| CDX81790 | Canola | plastid | 97.22 | 78.65 |
| AT1G06400.1 | Thale cress | cytosol | 77.31 | 77.31 |
| VIT_19s0014g01160.t01 | Wine grape | extracellular | 88.89 | 76.19 |
| AT5G60860.1 | Thale cress | cytosol | 75.46 | 75.12 |
| AT3G15060.1 | Thale cress | cytosol | 74.54 | 74.19 |
| AT1G28550.1 | Thale cress | cytosol | 72.69 | 72.02 |
| AT2G33870.1 | Thale cress | cytosol | 72.22 | 71.56 |
| AT4G18430.1 | Thale cress | cytosol | 70.83 | 70.51 |
| AT1G07410.1 | Thale cress | cytosol | 68.98 | 69.63 |
| AT5G59150.1 | Thale cress | cytosol | 69.44 | 69.12 |
| AT1G09630.1 | Thale cress | cytosol | 68.52 | 68.2 |
| AT3G46830.1 | Thale cress | cytosol | 67.59 | 67.28 |
| HORVU3Hr1G071740.1 | Barley | plastid | 82.87 | 62.59 |
| AT5G47960.1 | Thale cress | cytosol | 60.65 | 58.74 |
| AT3G12160.1 | Thale cress | cytosol | 59.72 | 58.11 |
| AT4G39990.1 | Thale cress | cytosol | 58.33 | 56.25 |
| AT5G65270.1 | Thale cress | cytosol | 58.8 | 56.19 |
| AT1G01200.1 | Thale cress | cytosol | 54.17 | 49.37 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | EntrezGene:838263 | UniProt:A0A178WJV5 | ProteinID:AAF99840.1 | ProteinID:AEE29522.1 |
| EMBL:AK227865 | ArrayExpress:AT1G16920 | EnsemblPlantsGene:AT1G16920 | RefSeq:AT1G16920 | TAIR:AT1G16920 | RefSeq:AT1G16920-TAIR-G |
| EnsemblPlants:AT1G16920.1 | TAIR:AT1G16920.1 | EMBL:AY086881 | EMBL:BT006406 | GO:GO:0000166 | GO:GO:0003674 |
| GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 | GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 | GO:GO:0005773 | GO:GO:0005774 | GO:GO:0005886 |
| GO:GO:0006810 | GO:GO:0006886 | GO:GO:0006950 | GO:GO:0008150 | GO:GO:0009628 | GO:GO:0009987 |
| GO:GO:0015031 | GO:GO:0016020 | GO:GO:0016787 | GO:GO:0042538 | GO:GO:0060627 | EMBL:L18883 |
| RefSeq:NP_173136.1 | ProteinID:OAP18630.1 | InterPro:P-loop_NTPase | PFAM:PF00071 | PO:PO:0000005 | PO:PO:0000013 |
| PO:PO:0000037 | PO:PO:0000230 | PO:PO:0000256 | PO:PO:0000293 | PO:PO:0001054 | PO:PO:0001078 |
| PO:PO:0001081 | PO:PO:0001185 | PO:PO:0004507 | PO:PO:0005052 | PO:PO:0007064 | PO:PO:0007095 |
| PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 | PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 |
| PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 | PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 |
| PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 | PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 |
| PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 | PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 |
| PO:PO:0025281 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF592 | UniProt:Q39222 |
| Symbol:RAB11 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000013315A | : | : |
Description
RABA1BRABA1b [Source:UniProtKB/TrEMBL;Acc:A0A178WJV5]
Coordinates
chr1:-:5787150..5789312
Molecular Weight (calculated)
24021.5 Da
IEP (calculated)
5.450
GRAVY (calculated)
-0.341
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MAGYRVEDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLKVDGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENVDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN ASVPKGEKIE
201: VKNDVSALKK LGCCSN
101: FENVDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN ASVPKGEKIE
201: VKNDVSALKK LGCCSN
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.