CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS3B01G324300.1	Wheat	cytosol, golgi	85.91	85.52
TraesCS3A01G289600.1	Wheat	cytosol	85.91	85.52
TraesCS3D01G289400.1	Wheat	cytosol	85.45	85.07
EER89913	Sorghum	cytosol	82.73	83.87
KRH27364	Soybean	endoplasmic reticulum	82.73	83.87
GSMUA_Achr9P05610_001	Banana	cytosol	81.82	83.72
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	82.27	83.41
AT1G16920.1	Thale cress	cytosol	80.91	82.41
GSMUA_Achr4P02540_001	Banana	cytosol	71.36	81.77
CDY35128	Canola	cytosol	80.0	81.48
CDY40023	Canola	cytosol	80.0	81.48
GSMUA_Achr3P15680_001	Banana	plasma membrane	80.0	81.11
Bra026016.1-P	Field mustard	cytosol	79.55	81.02
GSMUA_Achr8P27780_001	Banana	cytosol	65.91	80.56
CDX96799	Canola	cytosol	78.18	79.63
GSMUA_Achr6P31790_001	Banana	cytosol	60.0	79.52
OQU89311	Sorghum	cytosol	73.64	75.0
EES19950	Sorghum	cytosol	72.73	74.07
VIT_19s0014g01160.t01	Wine grape	extracellular	84.55	73.81
OQU87300	Sorghum	cytosol	70.0	70.32
KXG37238	Sorghum	cytosol	66.36	67.91
EER98344	Sorghum	cytosol	67.73	66.82
HORVU3Hr1G071740.1	Barley	plastid	85.91	66.08
OQU77196	Sorghum	cytosol	65.91	65.91
CDX81790	Canola	plastid	79.09	65.17
EES17935	Sorghum	cytosol	63.64	64.52
EER90540	Sorghum	cytosol	65.0	60.59
EER92725	Sorghum	cytosol	58.64	59.45
OQU91938	Sorghum	cytosol	58.64	59.45
EER96479	Sorghum	cytosol	60.0	58.41
EER90389	Sorghum	cytosol	44.55	46.89
EER97073	Sorghum	cytosol	54.55	46.88

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:8082978	UniProt:C5Z0Z5	EnsemblPlants:EES19812	ProteinID:EES19812
ProteinID:EES19812.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768
GO:GO:0005773	GO:GO:0005774	GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150
GO:GO:0009628	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	GO:GO:0042538	GO:GO:0060627
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF544
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3009G198700	SUPFAM:SSF52540
unigene:Sbi.11521	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A89077	RefSeq:XP_002441382.1
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr9:-:54895228..54898382

Molecular Weight (calculated)

24210.5 Da

IEP (calculated)

4.985

GRAVY (calculated)

-0.285

Length

220 amino acids

Sequence
(BLAST)

001: MAANGGGYRA EDDYDYLFKV VLIGDSGVGK SNLLSRFTKN EFSLESKSTI GVEFATRSLQ VDGKVIKAQI WDTAGQERYR AITSAYYRGA VGALLVYDVT
101: RRATFDNVGR WLRELRDHTD QSIVVMLIGN KSDLRHLVAV STDDAKEYAE AESMYFMETS ALDATNVDNA FSEVLTQIYQ IVSKKTVEAL EEGAAGPGKG
201: EKINVKDDVS AMKRVGCCSN

Best Arabidopsis Sequence Match ( AT1G16920.1 )
(BLAST)

001: MAGYRVEDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLKVDGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENVDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN ASVPKGEKIE
201: VKNDVSALKK LGCCSN

Arabidopsis Description

RABA1BRABA1b [Source:UniProtKB/TrEMBL;Acc:A0A178WJV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.