CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
EES03822
EES15518
KXG22202
KXG38626
OQU79263
OQU82692

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G01200.1	EES03822	AT2G38360.1	21798944
AT1G01200.1	EES15518	AT2G38360.1	21798944
AT1G01200.1	KXG22202	AT2G38360.1	21798944
AT1G01200.1	KXG38626	AT2G38360.1	21798944
AT1G01200.1	OQU79263	AT2G38360.1	21798944
AT1G01200.1	OQU82692	AT2G38360.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Zm00001d021246_P002	Maize	cytosol	92.97	95.97
Os09t0527600-01	Rice	cytosol, plasma membrane	83.98	89.96
HORVU5Hr1G080990.3	Barley	cytosol, plasma membrane, vacuole	74.22	85.97
TraesCS5D01G321800.1	Wheat	cytosol	81.64	85.31
TraesCS5B01G316300.1	Wheat	cytosol	82.42	85.08
TraesCS5A01G315700.1	Wheat	cytosol	81.64	84.62
GSMUA_Achr9P00860_001	Banana	cytosol	61.72	68.7
EER90389	Sorghum	cytosol	55.47	67.94
GSMUA_Achr3P13850_001	Banana	cytosol	61.33	67.09
AT1G01200.1	Thale cress	cytosol	58.2	62.87
KRH06418	Soybean	cytosol	58.59	61.48
Bra033277.1-P	Field mustard	cytosol	56.64	61.18
CDX90017	Canola	cytosol	56.64	61.18
KRH47850	Soybean	cytosol	58.2	60.82
CDY15192	Canola	cytosol	56.25	60.76
VIT_15s0048g03000.t01	Wine grape	cytosol	55.86	59.83
PGSC0003DMT400000356	Potato	cytosol	55.86	59.34
KRG97215	Soybean	cytosol	54.69	59.32
KRH68938	Soybean	cytosol	54.69	59.32
Solyc01g096220.2.1	Tomato	plastid	56.25	59.26
EER96479	Sorghum	cytosol	51.17	57.96
EER92725	Sorghum	cytosol	47.66	56.22
OQU91938	Sorghum	cytosol	47.66	56.22
EES19812	Sorghum	cytosol	46.88	54.55
EER89913	Sorghum	cytosol	45.7	53.92
OQU87300	Sorghum	cytosol	46.09	53.88
EER98344	Sorghum	cytosol	46.88	53.81
OQU89311	Sorghum	cytosol	45.31	53.7
EES19950	Sorghum	cytosol	44.92	53.24
KXG37238	Sorghum	cytosol	44.14	52.56
OQU77196	Sorghum	cytosol	44.14	51.36
EES17935	Sorghum	cytosol	43.36	51.15
EER90540	Sorghum	cytosol	46.48	50.42

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:8054884	UniProt:C5X647	EnsemblPlants:EER97073	ProteinID:EER97073
ProteinID:EER97073.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488
GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005634	GO:GO:0005737
GO:GO:0005768	GO:GO:0005794	GO:GO:0008150	GO:GO:0009504	GO:GO:0009987	GO:GO:0016787
GO:GO:0042546	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF679	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	EnsemblPlantsGene:SORBI_3002G271600
SUPFAM:SSF52540	unigene:Sbi.4644	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0001A8391C
RefSeq:XP_002460552.1	SEG:seg	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:+:65504379..65507889

Molecular Weight (calculated)

27946.9 Da

IEP (calculated)

5.284

GRAVY (calculated)

-0.316

Length

256 amino acids

Sequence
(BLAST)

001: MVALGQGGNR TKEAEEEAAA RWESEKEAEI DYVFKVVVVG DSAVGKTQLL ARFTRDEFAL DSKSTIGVEF QTRTLTLHRK RVKAQIWDTA GQERYRAVTS
101: AYYRGALGAM VVYDVTRRAT FEHVARWVEE LRAHADGSST VVALIGNKAD MPAGRREVAA DEAARLAEEQ GLFFSEASAL TGDNVERAFL TLLEEVFAVV
201: SRRALELDEA RRMRGDQGQG DGGRGGEVLS LKGTAVDVGS IMETSAMKRS SQCACS

Best Arabidopsis Sequence Match ( AT1G01200.1 )
(BLAST)

001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC

Arabidopsis Description

RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.