Subcellular Localization
min:
: max
Winner_takes_all: plasma membrane, cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 5
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
| plasma membrane:
27800704
|
msms PMID:
27800704
doi
Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| Os01t0827400-01 | |
| Os05t0474400-01 | |
| Os11t0107600-01 | |
| Os12t0107600-00 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01200.1 | Os01t0827400-01 | AT2G38360.1 | 21798944 |
| AT1G01200.1 | Os05t0474400-01 | AT2G38360.1 | 21798944 |
| AT1G01200.1 | Os11t0107600-01 | AT2G38360.1 | 21798944 |
| AT1G01200.1 | Os12t0107600-00 | AT2G38360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| HORVU5Hr1G080990.3 | Barley | cytosol, plasma membrane, vacuole | 78.66 | 85.07 |
| TraesCS5D01G321800.1 | Wheat | cytosol | 86.19 | 84.08 |
| EER97073 | Sorghum | cytosol | 89.96 | 83.98 |
| TraesCS5B01G316300.1 | Wheat | cytosol | 86.61 | 83.47 |
| Zm00001d021246_P002 | Maize | cytosol | 86.19 | 83.06 |
| TraesCS5A01G315700.1 | Wheat | cytosol | 85.77 | 83.0 |
| Os06t0714600-01 | Rice | cytosol | 66.95 | 71.11 |
| GSMUA_Achr3P13850_001 | Banana | cytosol | 68.62 | 70.09 |
| GSMUA_Achr9P00860_001 | Banana | cytosol | 66.53 | 69.13 |
| AT1G01200.1 | Thale cress | cytosol | 63.18 | 63.71 |
| KRH06418 | Soybean | cytosol | 64.02 | 62.7 |
| KRH47850 | Soybean | cytosol | 63.6 | 62.04 |
| Bra033277.1-P | Field mustard | cytosol | 61.09 | 61.6 |
| CDX90017 | Canola | cytosol | 61.09 | 61.6 |
| PGSC0003DMT400000356 | Potato | cytosol | 61.92 | 61.41 |
| Solyc01g096220.2.1 | Tomato | plastid | 62.34 | 61.32 |
| CDY15192 | Canola | cytosol | 60.67 | 61.18 |
| KRH68938 | Soybean | cytosol | 60.25 | 61.02 |
| KRG97215 | Soybean | cytosol | 60.25 | 61.02 |
| VIT_15s0048g03000.t01 | Wine grape | cytosol | 60.25 | 60.25 |
| Os01t0848700-01 | Rice | cytosol, plasma membrane | 49.79 | 55.09 |
| Os09t0327100-01 | Rice | plasma membrane | 49.79 | 55.09 |
| Os10t0377400-01 | Rice | cytosol | 49.79 | 55.09 |
| Os05t0564400-02 | Rice | plasma membrane | 49.37 | 54.38 |
| Os06t0551400-01 | Rice | cytosol, golgi, plasma membrane, plastid | 48.95 | 53.92 |
| Os03t0843100-01 | Rice | cytosol | 49.79 | 53.36 |
| Os05t0105100-01 | Rice | golgi, plasma membrane | 48.12 | 52.27 |
| Os03t0823700-01 | Rice | plasma membrane | 46.44 | 51.63 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | EntrezGene:4347642 | EMBL:AK111543 | ProteinID:BAD46365.1 | ProteinID:BAF25645.1 |
| ProteinID:BAT09063.1 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 | GO:GO:0005488 |
| GO:GO:0005525 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005768 |
| GO:GO:0005794 | GO:GO:0016787 | EnsemblPlantsGene:Os09g0527600 | EnsemblPlants:Os09t0527600-01 | InterPro:P-loop_NTPase | PFAM:PF00071 |
| PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF679 | UniProt:Q652A2 | SMART:SM00173 |
| SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase |
| TIGRFAMs:TIGR00231 | UniParc:UPI000043A555 | RefSeq:XP_015610618.1 | SEG:seg | : | : |
Description
small GTP-binding protein OsRab11F2Similar to GTP-binding protein (Fragment). (Os09t0527600-01)
Coordinates
chr9:+:20637825..20639768
Molecular Weight (calculated)
26308.2 Da
IEP (calculated)
4.962
GRAVY (calculated)
-0.192
Length
239 amino acids
Sequence
(BLAST)
(BLAST)
001: MVAEEEVVVV WEGEKEGEID YVFKVVVVGD SAVGKTQLLG RFTKDEFFLD SKSTIGVEFQ TRTLSLHRKR VKAQIWDTAG QERYRAVTSA YYRGALGAMV
101: VYDITRRRTF ENVARWVEEL RAHADGSTVV ALIGNKADMP AGRREVAADE AARFAEEQGL FFSEASALSG DNVDRAFLTL LEEIFAVVSR RALELDEARR
201: MRDGGAGGGE VLSLKGTTLD VGSIMETSAM KKSSQCSCS
101: VYDITRRRTF ENVARWVEEL RAHADGSTVV ALIGNKADMP AGRREVAADE AARFAEEQGL FFSEASALSG DNVDRAFLTL LEEIFAVVSR RALELDEARR
201: MRDGGAGGGE VLSLKGTTLD VGSIMETSAM KKSSQCSCS
001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
Arabidopsis Description
RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.