Factsheet for Os06t0551400-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, golgi, plastid, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

golgi: 25047511
plasma membrane: 27800704
plastid: 27992503

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER89913	Sorghum	cytosol	98.16	98.16
Zm00001d046313_P001	Maize	plastid	96.77	96.77
TraesCS7A01G354400.1	Wheat	golgi	94.47	94.47
TraesCS7D01G368300.1	Wheat	cytosol	94.47	94.47
TraesCS7B01G273300.1	Wheat	plastid	93.55	93.55
HORVU7Hr1G089120.1	Barley	cytosol	94.47	83.0
Os09t0327100-01	Rice	plasma membrane	80.65	81.02
Os05t0564400-02	Rice	plasma membrane	78.8	78.8
Zm00001d037004_P002	Maize	cytosol	98.16	74.22
Os03t0843100-01	Rice	cytosol	68.66	66.82
Os05t0105100-01	Rice	golgi, plasma membrane	67.28	66.36
Os03t0823700-01	Rice	plasma membrane	65.44	66.05
Os01t0848700-01	Rice	cytosol, plasma membrane	65.44	65.74
Os10t0377400-01	Rice	cytosol	58.99	59.26
Os06t0714600-01	Rice	cytosol	54.38	52.44
Os09t0527600-01	Rice	cytosol, plasma membrane	53.92	48.95

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:4341266	EMBL:AF327517	EMBL:AK066548	ProteinID:BAD53715.1
ProteinID:BAF19751.1	ProteinID:BAS98191.1	EMBL:D13758	ProteinID:EEE65860.1	GO:GO:0000166	GO:GO:0003674
GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005886	GO:GO:0016020	GO:GO:0016787
EnsemblPlantsGene:Os06g0551400	EnsemblPlants:Os06t0551400-01	InterPro:P-loop_NTPase	UniProt:P40393	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF544	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000009EAAD
RefSeq:XP_015644018.1	:	:	:	:	:

Description

ras-related small GTP-binding protein ric2Ras-related small GTP-binding protein, Regulation of vesicular trafficking from trans-Golgi network to plasma membrane or vacuole, Jasmonic acid (JA)-mediated defense signaling (Os06t0551400-01)

Coordinates

chr6:-:20896135..20901653

Molecular Weight (calculated)

23924.1 Da

IEP (calculated)

5.419

GRAVY (calculated)

-0.326

Length

217 amino acids

Sequence
(BLAST)

001: MAAGYRAEDD YDYLFKVVLI GDSGVGKSNL LSRFTRNEFS LESKSTIGVE FATRSLQVDG KVVKAQIWDT AGQERYRAIT SAYYRGAVGA LLVYDVTRHS
101: TFENVERWLK ELRDHTDPNI VVMLVGNKSD LRHLVAVQTD EGKAFAERES LYFMETSALE STNVENAFAE VLTQIYRIVS KRSVEAGDDA GSGPGKGEKI
201: NIKDDVSAVK KGGCCSG

Best Arabidopsis Sequence Match ( AT4G18800.1 )
(BLAST)

001: MAGYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSLNVNEK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHST
101: FENVERWLRE LRDHTDPNIV VMLVGNKSDL RHLVAVQTED AKSFAENESL YFMETSALES TNVENAFSEV LTQIYHVVSK KAMEAGEDSG NVPSKGEKID
201: VDVSAVKKTG CCSN

Arabidopsis Description

RABA1DRABA1d [Source:UniProtKB/TrEMBL;Acc:A0A178V3A0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.