Factsheet for Os09t0327100-01

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

golgi: 25047511
plasma membrane: 27800704
plasma membrane: 28056797

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 28056797 doi

N Yang, T Wang

Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China., Key Laboratory of Plant Molecular Physiology, Institute of Botany, Chinese Academy of Sciences, and National Center for Plant Gene Research, 20 Nanxincun, Xiangshan, Haidianqu, Beijing, 100093, China. twang@ibcas.ac.cn.

msms PMID: 25047511 doi

Y Nie, F Huang, S Dong, L Li, P Gao, H Zhao, Y Wang, S Han

Beijing Key Laboratory of Gene Resource and Molecular Development, Beijing Normal University, College of Life Sciences, Beijing, P. R. China.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os01t0269100-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	Os01t0269100-01	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU89311	Sorghum	cytosol	100.0	100.0
TraesCS5A01G184100.1	Wheat	golgi, plastid	98.15	98.15
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	98.15	98.15
TraesCS5D01G188900.1	Wheat	cytosol	97.69	97.69
TraesCS5B01G182200.1	Wheat	cytosol	97.22	97.22
Os05t0564400-02	Rice	plasma membrane	93.98	93.55
VIT_10s0003g00550.t01	Wine grape	cytosol	92.59	92.17
Solyc07g053480.2.1	Tomato	cytosol, plastid	92.13	91.71
PGSC0003DMT400024319	Potato	cytosol	92.13	91.71
KRH20359	Soybean	cytosol, endoplasmic reticulum	92.13	91.71
VIT_19s0014g01820.t01	Wine grape	cytosol	91.67	91.24
AT5G60860.1	Thale cress	cytosol	91.67	91.24
PGSC0003DMT400020208	Potato	cytosol	91.2	90.78
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	90.74	90.32
KRH50137	Soybean	cytosol, mitochondrion	90.74	90.32
KRH25681	Soybean	cytosol	90.28	89.86
KRH55839	Soybean	endoplasmic reticulum	89.81	89.4
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	89.35	88.94
KRH30863	Soybean	cytosol	89.35	88.94
Solyc12g014080.1.1	Tomato	cytosol	88.43	88.02
CDX75804	Canola	cytosol	88.43	87.61
CDX82451	Canola	cytosol	88.43	87.61
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	87.96	87.56
AT3G15060.1	Thale cress	cytosol	87.96	87.56
Bra001581.1-P	Field mustard	cytosol	87.96	87.16
Bra010860.1-P	Field mustard	cytosol	86.57	86.98
CDX90160	Canola	cytosol	86.57	86.98
CDY35757	Canola	cytosol	87.5	86.7
CDY34094	Canola	cytosol	87.5	86.7
CDY30818	Canola	cytosol	87.5	86.7
Bra032914.1-P	Field mustard	cytosol	87.5	86.7
VIT_12s0028g02650.t01	Wine grape	cytosol	86.57	86.57
Bra030105.1-P	Field mustard	cytosol	86.57	85.78
CDX94631	Canola	cytosol	86.57	85.78
AT1G28550.1	Thale cress	cytosol	86.11	85.32
CDY15659	Canola	cytosol	86.11	85.32
AT2G33870.1	Thale cress	cytosol	85.65	84.86
CDX79548	Canola	cytosol	77.31	84.77
PGSC0003DMT400033395	Potato	cytosol	84.72	84.72
PGSC0003DMT400058784	Potato	cytosol	84.26	84.65
Solyc03g006270.2.1	Tomato	cytosol	84.26	84.26
Solyc10g008840.2.1	Tomato	cytosol	83.8	84.19
CDY20100	Canola	cytosol	84.72	83.94
Bra021589.1-P	Field mustard	cytosol	84.72	83.94
Bra022959.1-P	Field mustard	cytosol	83.8	83.03
Os06t0551400-01	Rice	cytosol, golgi, plasma membrane, plastid	81.02	80.65
GSMUA_Achr7P14790_001	Banana	cytosol	71.3	80.21
AT4G18430.1	Thale cress	cytosol	80.56	80.18
KRH27001	Soybean	cytosol, endoplasmic reticulum	80.56	79.82
CDY01540	Canola	cytosol	80.09	79.72
CDY55638	Canola	cytosol	80.09	79.72
Bra012597.1-P	Field mustard	cytosol	79.63	79.26
CDX76522	Canola	cytosol	79.17	78.8
KRH22324	Soybean	cytosol, endoplasmic reticulum	79.17	78.44
Bra021009.1-P	Field mustard	cytosol	78.7	78.34
CDY60884	Canola	cytosol	74.07	71.75
Os03t0843100-01	Rice	cytosol	69.44	67.26
Os05t0105100-01	Rice	golgi, plasma membrane	66.67	65.45
Os03t0823700-01	Rice	plasma membrane	64.81	65.12
Os01t0848700-01	Rice	cytosol, plasma membrane	64.81	64.81
Os10t0377400-01	Rice	cytosol	58.8	58.8
GSMUA_Achr7P10970_001	Banana	cytosol	68.52	58.5
Os06t0714600-01	Rice	cytosol	52.78	50.67
Os09t0527600-01	Rice	cytosol, plasma membrane	55.09	49.79

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:4339623	EntrezGene:4346744	ProteinID:AAT77401.1	EMBL:AK071461
EMBL:AK073075	EMBL:AK109344	ProteinID:BAD23597.1	ProteinID:BAF18247.1	ProteinID:BAF24801.2	ProteinID:BAS95355.1
ProteinID:BAT07493.1	ProteinID:EAZ44270.1	ProteinID:EEE64702.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0016787	EnsemblPlantsGene:Os09g0327100	EnsemblPlants:Os09t0327100-01	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF346	UniProt:Q6K2P6
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00003B06CC	RefSeq:XP_015639848.1	RefSeq:XP_015651190.1

Description

small GTP-binding protein OsRab11C2Similar to GTP-binding protein. (Os09t0327100-01)

Coordinates

chr9:-:9643566..9645793

Molecular Weight (calculated)

24022.4 Da

IEP (calculated)

5.803

GRAVY (calculated)

-0.260

Length

216 amino acids

Sequence
(BLAST)

001: MAYRAEDDYD YLFKVVLIGD SGVGKSNLLS RFTRNEFSLE SKSTIGVEFA TRSIRVDDKV VKAQIWDTAG QERYRAITSA YYRGAVGALV VYDVTRHVTF
101: ENVERWLKEL RDHTDANIVI MLVGNKADLR HLRAVSVEDA KGFAERESTF FMETSALESM NVESAFTEVL TQIYRVVSKK ALDIGDDPAA PPRGQTINVG
201: GKDDVSAVKK SGCCSS

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.