Factsheet for Solyc03g006270.2.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc02g082730.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	Solyc02g082730.2.1	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400033395	Potato	cytosol	99.54	99.54
Solyc10g008840.2.1	Tomato	cytosol	91.67	92.09
KRH20359	Soybean	cytosol, endoplasmic reticulum	86.57	86.18
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	86.57	86.18
AT5G60860.1	Thale cress	cytosol	86.11	85.71
KRH30863	Soybean	cytosol	86.11	85.71
VIT_10s0003g00550.t01	Wine grape	cytosol	85.65	85.25
KRH50137	Soybean	cytosol, mitochondrion	85.65	85.25
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	84.72	84.72
TraesCS5A01G184100.1	Wheat	golgi, plastid	84.72	84.72
TraesCS5D01G188900.1	Wheat	cytosol	84.26	84.26
TraesCS5B01G182200.1	Wheat	cytosol	84.26	84.26
Os09t0327100-01	Rice	plasma membrane	84.26	84.26
OQU89311	Sorghum	cytosol	84.26	84.26
AT3G15060.1	Thale cress	cytosol	84.26	83.87
Solyc07g053480.2.1	Tomato	cytosol, plastid	84.26	83.87
TraesCS7B01G200600.1	Wheat	cytosol	83.8	83.8
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	83.8	83.8
EES19950	Sorghum	cytosol	83.8	83.8
Solyc12g014080.1.1	Tomato	cytosol	83.8	83.41
AT4G18430.1	Thale cress	cytosol	83.8	83.41
TraesCS7A01G285200.1	Wheat	cytosol	83.33	83.33
TraesCS7D01G289000.1	Wheat	cytosol	83.33	83.33
CDX90160	Canola	cytosol	82.87	83.26
Bra010860.1-P	Field mustard	cytosol	82.87	83.26
GSMUA_Achr3P15540_001	Banana	cytosol	82.87	82.87
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	82.87	82.87
CDX79548	Canola	cytosol	75.46	82.74
CDY30818	Canola	cytosol	83.33	82.57
CDY35757	Canola	cytosol	83.33	82.57
CDY34094	Canola	cytosol	83.33	82.57
CDY15659	Canola	cytosol	83.33	82.57
CDX94631	Canola	cytosol	83.33	82.57
Bra032914.1-P	Field mustard	cytosol	83.33	82.57
Bra030105.1-P	Field mustard	cytosol	83.33	82.57
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	82.87	82.49
Os05t0564400-02	Rice	plasma membrane	82.87	82.49
TraesCS1A01G398400.1	Wheat	cytosol	82.41	82.41
CDY55638	Canola	cytosol	82.41	82.03
CDY01540	Canola	cytosol	82.41	82.03
CDX76522	Canola	cytosol	82.41	82.03
TraesCS1B01G426300.1	Wheat	cytosol	81.94	81.94
TraesCS1D01G405900.1	Wheat	cytosol	81.94	81.94
AT2G33870.1	Thale cress	cytosol	82.41	81.65
AT1G28550.1	Thale cress	cytosol	82.41	81.65
Bra022959.1-P	Field mustard	cytosol	82.41	81.65
Bra012597.1-P	Field mustard	cytosol	81.94	81.57
Bra021009.1-P	Field mustard	cytosol	81.94	81.57
GSMUA_Achr5P09130_001	Banana	cytosol	81.48	81.11
Bra021589.1-P	Field mustard	cytosol	81.48	80.73
CDY20100	Canola	cytosol	81.48	80.73
GSMUA_Achr8P27180_001	Banana	cytosol	80.56	80.56
Bra001581.1-P	Field mustard	cytosol	81.02	80.28
CDX82451	Canola	cytosol	80.56	79.82
GSMUA_Achr1P11940_001	Banana	cytosol	79.63	79.63
CDX75804	Canola	cytosol	79.63	78.9
GSMUA_Achr4P02760_001	Banana	cytosol	68.52	77.89
TraesCS3D01G244500.1	Wheat	cytosol	77.31	76.61
TraesCS3A01G247000.1	Wheat	cytosol	77.31	76.61
GSMUA_Achr1P04780_001	Banana	cytosol	70.83	76.5
Solyc07g055290.2.1	Tomato	plastid	76.85	76.15
Solyc02g072180.2.1	Tomato	cytosol	75.93	75.58
GSMUA_Achr7P14790_001	Banana	cytosol	66.67	75.0
CDY60884	Canola	cytosol	76.85	74.44
OQU87300	Sorghum	cytosol	74.54	73.52
Zm00001d043935_P001	Maize	cytosol	74.54	73.18
Solyc06g005810.2.1	Tomato	cytosol, unclear	66.2	66.2
Solyc05g052900.2.1	Tomato	cytosol	65.74	66.05
Solyc06g076450.2.1	Tomato	plastid	65.28	65.58
Solyc01g103380.2.1	Tomato	nucleus	64.81	65.42
Solyc03g079900.2.1	Tomato	cytosol	64.81	65.12
Solyc10g045550.1.1	Tomato	nucleus	64.81	65.12
Solyc01g086850.2.1	Tomato	cytosol	61.11	58.67
GSMUA_Achr7P10970_001	Banana	cytosol	67.13	57.31
Solyc10g079030.1.1	Tomato	plastid	58.8	56.19
Solyc11g010100.1.1	Tomato	cytosol	57.87	55.8
Solyc04g012180.2.1	Tomato	cytosol, unclear	56.94	55.41
Solyc03g064020.2.1	Tomato	cytosol	57.41	55.36
Solyc01g096220.2.1	Tomato	plastid	56.02	49.79
TraesCS3B01G272300.1	Wheat	cytosol	77.31	48.27

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:K4BE50	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF842	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	EnsemblPlantsGene:Solyc03g006270.2
EnsemblPlants:Solyc03g006270.2.1	TIGRFAMs:TIGR00231	UniParc:UPI00027677E8	:	:	:

Description

No Description!

Coordinates

chr3:+:888904..890977

Molecular Weight (calculated)

24010.3 Da

IEP (calculated)

5.720

GRAVY (calculated)

-0.290

Length

216 amino acids

Sequence
(BLAST)

001: MGAYRADEDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFSQ ESKSTIGVEF ATRTIHVDDK IIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDITRHVT
101: FENVARWLKE LRDHTDQNIV VMLVGNKADL RHLRAVPTGE SSGFAERENT FFMETSALEA LNVENAFTEV LTQIYRVVSR KALDIGDDPT SVPRGQTINI
201: GKDDVSAVKN GGCCSG

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.