Factsheet for Solyc10g079030.1.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

plastid: 22908117

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400021064	Potato	cytosol	98.67	98.67
Solyc03g064020.2.1	Tomato	cytosol	85.4	86.16
Bra001439.1-P	Field mustard	cytosol	81.86	83.71
CDX73833	Canola	cytosol	81.86	83.71
CDY00758	Canola	cytosol	81.86	83.71
AT3G12160.1	Thale cress	cytosol	81.86	83.33
CDY08447	Canola	cytosol	81.86	83.33
CDY42133	Canola	cytosol	81.86	83.33
Bra038701.1-P	Field mustard	cytosol	81.42	82.88
CDY50568	Canola	cytosol	81.42	82.88
CDY52622	Canola	cytosol	81.42	82.88
VIT_08s0007g07800.t01	Wine grape	cytosol	80.97	82.06
KRH75359	Soybean	endoplasmic reticulum	80.09	81.17
KRH33003	Soybean	cytosol	80.09	80.44
KRG88929	Soybean	cytosol	79.2	80.27
KRH71891	Soybean	cytosol	77.43	78.48
Solyc01g086850.2.1	Tomato	cytosol	75.22	75.56
Bra034771.1-P	Field mustard	cytosol	81.86	70.34
Solyc04g012180.2.1	Tomato	cytosol, unclear	67.7	68.92
Solyc11g010100.1.1	Tomato	cytosol	67.7	68.3
Solyc03g079900.2.1	Tomato	cytosol	59.73	62.79
Solyc06g005810.2.1	Tomato	cytosol, unclear	58.85	61.57
Solyc06g076450.2.1	Tomato	plastid	57.96	60.93
Solyc05g052900.2.1	Tomato	cytosol	57.52	60.47
Solyc07g053480.2.1	Tomato	cytosol, plastid	57.96	60.37
Solyc10g008840.2.1	Tomato	cytosol	57.08	60.0
Solyc10g045550.1.1	Tomato	nucleus	57.08	60.0
Solyc01g103380.2.1	Tomato	nucleus	56.64	59.81
Solyc03g006270.2.1	Tomato	cytosol	56.19	58.8
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	56.19	58.53
Solyc02g072180.2.1	Tomato	cytosol	55.75	58.06
Solyc12g014080.1.1	Tomato	cytosol	55.75	58.06
Solyc07g055290.2.1	Tomato	plastid	55.75	57.8
Solyc01g096220.2.1	Tomato	plastid	60.62	56.38

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005794	GO:GO:0016787	UniProt:K4D2E4	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF863	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
EnsemblPlantsGene:Solyc10g079030.1	EnsemblPlants:Solyc10g079030.1.1	TIGRFAMs:TIGR00231	UniParc:UPI000276A57E	SEG:seg	:

Description

No Description!

Coordinates

chr10:-:60670713..60672194

Molecular Weight (calculated)

24936.7 Da

IEP (calculated)

6.780

GRAVY (calculated)

-0.200

Length

226 amino acids

Sequence
(BLAST)

001: MSSNLYADHY NQKIDYVFKI VLIGDSAVGK SQLLARFARN EFSLDSKATI GVEFQTKTLL VDNKTVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDLT
101: KRQSFDHMAR WLEELRGHAD KNIVIMLIAN KCDLGSLRAV PVEDAQEFAE RENLFFMETS ALQSTNVEGA FMTILTEIYK IISKNTLTAA PGADYGKSQS
201: LKGTRIIVPG QDSDSGGNSG GCCMSS

Best Arabidopsis Sequence Match ( AT3G12160.1 )
(BLAST)

001: MSNLYGDYNQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SVDSKATIGV EFQTKTLVID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD DADGNSSLLK
201: GTRIIIPSEQ ESGKRGGCCG KS

Arabidopsis Description

RABA4DRABA4D [Source:UniProtKB/TrEMBL;Acc:A0A178V6M2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.