Factsheet for Bra001439.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX73833	Canola	cytosol	100.0	100.0
CDY00758	Canola	cytosol	99.55	99.55
AT3G12160.1	Thale cress	cytosol	98.19	97.75
Bra038701.1-P	Field mustard	cytosol	98.19	97.75
KRH33003	Soybean	cytosol	88.24	86.67
VIT_08s0007g07800.t01	Wine grape	cytosol	86.88	86.1
KRH71891	Soybean	cytosol	84.62	83.86
Solyc10g079030.1.1	Tomato	plastid	83.71	81.86
Bra034771.1-P	Field mustard	cytosol	96.83	81.37
PGSC0003DMT400033664	Potato	cytosol	82.35	81.25
Solyc03g064020.2.1	Tomato	cytosol	81.9	80.8
PGSC0003DMT400021064	Potato	cytosol	82.35	80.53
Bra037516.1-P	Field mustard	cytosol	77.83	77.13
Bra009040.1-P	Field mustard	cytosol	68.78	68.16
Bra037810.1-P	Field mustard	cytosol	69.23	68.0
Bra011818.1-P	Field mustard	cytosol	66.97	66.37
Bra010860.1-P	Field mustard	cytosol	60.18	61.86
Bra020006.1-P	Field mustard	cytosol	60.18	61.29
Bra002589.1-P	Field mustard	cytosol	60.18	61.29
Bra030105.1-P	Field mustard	cytosol	59.73	60.55
Bra032914.1-P	Field mustard	cytosol	59.73	60.55
Bra020334.1-P	Field mustard	cytosol	59.28	60.37
Bra018190.1-P	Field mustard	cytosol	59.28	60.37
Bra015578.1-P	Field mustard	cytosol	58.82	60.19
Bra001581.1-P	Field mustard	cytosol	59.28	60.09
Bra021009.1-P	Field mustard	cytosol	58.82	59.91
Bra021589.1-P	Field mustard	cytosol	58.82	59.63
Bra026016.1-P	Field mustard	cytosol	57.92	59.26
Bra012597.1-P	Field mustard	cytosol	57.92	58.99
Bra022959.1-P	Field mustard	cytosol	57.01	57.8
Bra032424.1-P	Field mustard	cytosol	57.92	57.4
Bra033277.1-P	Field mustard	cytosol	58.82	54.85
Bra031573.1-P	Field mustard	cytosol	58.37	50.39

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra001439	EnsemblPlants:Bra001439.1	EnsemblPlants:Bra001439.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4CB60	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF863	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002540797	:

Description

AT3G12160 (E=7e-120) ATRABA4D, RABA4D | RABA4D (RAB GTPASE HOMOLOG A4D); GTP binding

Coordinates

chrA03:-:16382140..16383560

Molecular Weight (calculated)

24706.4 Da

IEP (calculated)

5.424

GRAVY (calculated)

-0.286

Length

221 amino acids

Sequence
(BLAST)

001: MSNLYGDYNQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SVDSKATIGV EFQTKTLVID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAERE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD ADGNSNLLKG
201: TRIIIPSEQE SDKRGGCCGK T

Best Arabidopsis Sequence Match ( AT3G12160.1 )
(BLAST)

001: MSNLYGDYNQ KIDYVFKVVL IGDSAVGKTQ LLARFARNEF SVDSKATIGV EFQTKTLVID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDMTKR
101: QSFDHMAKWL EELRGHADKN IVIMLIGNKC DLGSLRAVPT EDAQEFAQRE NLFFMETSAL EATNVETAFL TILTEIYRII SKKSLTADDD DADGNSSLLK
201: GTRIIIPSEQ ESGKRGGCCG KS

Arabidopsis Description

RABA4DRABA4D [Source:UniProtKB/TrEMBL;Acc:A0A178V6M2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.