Factsheet for Bra002589.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY33014	Canola	cytosol	99.54	99.54
Bra020334.1-P	Field mustard	cytosol	94.01	94.01
AT5G59150.1	Thale cress	cytosol	93.55	93.55
Bra018190.1-P	Field mustard	cytosol	92.63	92.63
KRH29738	Soybean	endoplasmic reticulum	87.1	87.5
KRH24729	Soybean	endoplasmic reticulum, nucleus	87.1	87.5
Solyc06g005810.2.1	Tomato	cytosol, unclear	86.64	87.04
PGSC0003DMT400053686	Potato	cytosol	86.64	87.04
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	86.18	86.18
Bra015578.1-P	Field mustard	cytosol	85.25	85.65
PGSC0003DMT400078200	Potato	cytosol	84.33	85.12
Solyc06g076450.2.1	Tomato	plastid	83.87	84.65
CDX80299	Canola	cytosol	99.08	83.33
Bra020006.1-P	Field mustard	cytosol	73.27	73.27
Bra031573.1-P	Field mustard	cytosol	83.41	70.7
Bra026016.1-P	Field mustard	cytosol	69.12	69.44
Bra010860.1-P	Field mustard	cytosol	67.28	67.91
Bra001581.1-P	Field mustard	cytosol	68.2	67.89
Bra030105.1-P	Field mustard	cytosol	67.28	66.97
Bra032914.1-P	Field mustard	cytosol	66.82	66.51
Bra021589.1-P	Field mustard	cytosol	66.36	66.06
Bra012597.1-P	Field mustard	cytosol	64.98	64.98
Bra022959.1-P	Field mustard	cytosol	64.98	64.68
Bra021009.1-P	Field mustard	cytosol	64.06	64.06
Bra032424.1-P	Field mustard	cytosol	64.98	63.23
Bra001439.1-P	Field mustard	cytosol	61.29	60.18
Bra037516.1-P	Field mustard	cytosol	61.75	60.09
Bra009040.1-P	Field mustard	cytosol	61.75	60.09
Bra038701.1-P	Field mustard	cytosol	60.83	59.46
Bra037810.1-P	Field mustard	cytosol	59.91	57.78
Bra011818.1-P	Field mustard	cytosol	58.99	57.4
Bra034771.1-P	Field mustard	cytosol	60.83	50.19
Bra033277.1-P	Field mustard	cytosol	52.07	47.68

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra002589	EnsemblPlants:Bra002589.1	EnsemblPlants:Bra002589.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4CEF8	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002543B07	SEG:seg

Description

AT5G59150 (E=3e-106) ATRABA2D, ATRAB-A2D | ATRABA2D (HOARABIDOPSIS RAB GTPASE HOMOLOG A2D); GTP binding

Coordinates

chrA10:-:8712728..8714321

Molecular Weight (calculated)

23795.0 Da

IEP (calculated)

6.133

GRAVY (calculated)

-0.261

Length

217 amino acids

Sequence
(BLAST)

001: MTHRVEQDYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNALRWLREL RDHADSNIVI MMAGNKSDLN HLRSVSEEDG RNLAEAEGLS FLETSALEAT NVEKAFQTVL TEIYHIISKK ALAAQEAAAA NSAIPGKGTT
201: INVDDTSGAA KSGCCSS

Best Arabidopsis Sequence Match ( AT5G59150.1 )
(BLAST)

001: MAHRVEQDYD YLFKIVLIGD SGVGKTNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNVLRWLREL RDHADSNIVI MMAGNKADLN HLRSVAEEDG QTLAETEGLS FLETSALEAT NVEKAFQTVL AEIYHIISKK ALAAQEAAAA NSAIPGQGTT
201: INVEDTSGAG KRGCCST

Arabidopsis Description

RABA2DRas-related protein RABA2d [Source:UniProtKB/Swiss-Prot;Acc:Q9FIF9]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.