Factsheet for Bra009040.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, secretory
BaCelLo:	secretory
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX96994	Canola	cytosol	100.0	100.0
CDX69843	Canola	cytosol	99.55	99.55
Bra037810.1-P	Field mustard	cytosol	87.0	86.22
KRH59301	Soybean	cytosol, endoplasmic reticulum	81.17	79.04
Zm00001d014278_P001	Maize	extracellular, plasma membrane	76.68	78.8
TraesCS1D01G136900.1	Wheat	cytosol	76.23	78.7
TraesCS1B01G152100.1	Wheat	cytosol	76.23	78.7
TraesCS1A01G131500.2	Wheat	cytosol	76.23	78.7
OQU91938	Sorghum	cytosol	76.23	78.34
Os10t0377400-01	Rice	cytosol	75.34	77.78
GSMUA_Achr3P01690_001	Banana	cytosol	76.23	77.63
Bra011818.1-P	Field mustard	cytosol	77.13	77.13
EER92725	Sorghum	cytosol	73.99	76.04
GSMUA_Achr8P18090_001	Banana	cytosol	73.99	75.69
Zm00001d048222_P001	Maize	extracellular, plasma membrane	73.54	75.58
GSMUA_Achr3P21290_001	Banana	cytosol	73.99	75.34
Zm00001d028002_P001	Maize	mitochondrion	73.09	75.12
KRH43151	Soybean	cytosol, endoplasmic reticulum	77.13	72.57
Bra001439.1-P	Field mustard	cytosol	68.16	68.78
Bra037516.1-P	Field mustard	cytosol	68.61	68.61
Bra038701.1-P	Field mustard	cytosol	67.71	68.02
Bra002589.1-P	Field mustard	cytosol	60.09	61.75
HORVU1Hr1G034400.4	Barley	plasma membrane	75.34	61.54
Bra010860.1-P	Field mustard	cytosol	58.74	60.93
Bra020334.1-P	Field mustard	cytosol	59.19	60.83
Bra026016.1-P	Field mustard	cytosol	58.3	60.19
Bra015578.1-P	Field mustard	cytosol	58.3	60.19
Bra032914.1-P	Field mustard	cytosol	58.3	59.63
Bra030105.1-P	Field mustard	cytosol	58.3	59.63
Bra018190.1-P	Field mustard	cytosol	57.85	59.45
Bra021589.1-P	Field mustard	cytosol	57.4	58.72
Bra001581.1-P	Field mustard	cytosol	57.4	58.72
Bra020006.1-P	Field mustard	cytosol	56.05	57.6
Bra032424.1-P	Field mustard	cytosol	57.4	57.4
Bra022959.1-P	Field mustard	cytosol	56.05	57.34
Bra021009.1-P	Field mustard	cytosol	55.16	56.68
Bra012597.1-P	Field mustard	cytosol	55.16	56.68
Bra034771.1-P	Field mustard	cytosol	66.82	56.65
Bra033277.1-P	Field mustard	cytosol	57.4	54.01
Bra031573.1-P	Field mustard	cytosol	56.95	49.61

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	ProteinID:AAZ67615	ProteinID:AAZ67615.1	EMBL:AC155344	EnsemblPlantsGene:Bra009040
EnsemblPlants:Bra009040.1	EnsemblPlants:Bra009040.1-P	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	UniProt:Q4ABN7	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI000058C64D	:	:	:	:	:

Description

AT5G65270 (E=1e-110) AtRABA4a | AtRABA4a (Arabidopsis Rab GTPase homolog A4a); GTP binding

Coordinates

chrA10:-:14990325..14991149

Molecular Weight (calculated)

24374.9 Da

IEP (calculated)

5.775

GRAVY (calculated)

-0.218

Length

223 amino acids

Sequence
(BLAST)

001: MSSGGYGDPS QKIDYVFKLV LIGDSGVGKS QILSRYARNE FSLDSKATIG VEFQTRTLVM DHKSVKAQIW DTAGQERYRA VTSAYYRGAV GAMLVYDVTR
101: RQTFDHIPRW LEELRGHADK NIVIILVGNK SDLEDQRAIS TEDAKEFAET EGLFFLETSA LNAVNVETAF STVLTEIFNI VNKKNLVAGE GNGDPGSLAG
201: KKIDIVPGPA QVVPTKSGMC CNS

Best Arabidopsis Sequence Match ( AT5G65270.1 )
(BLAST)

001: MTSGGGYGDP SQKIDYVFKV VLIGDSAVGK SQILARYARD EFSLDSKATI GVEFQTRTLV IDHKSVKAQI WDTAGQERYR AVTSAYYRGA VGAMLVYDIT
101: RRQTFDHIPR WLEELRAHAD KNIVIILIGN KSDLVDQRAI PTEDAKEFAE KEGLFFLETS AFNATNVESA FSTVLTEIFN IVNKKSLAAS EDQENGNPGS
201: LAGKKIDIVP GPGQVIPNKS NMCCNS

Arabidopsis Description

RABA4ARABA4a [Source:UniProtKB/TrEMBL;Acc:A0A178UKD0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.