Factsheet for Bra037516.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 2
cytosol 4
mitochondrion 1
extracellular 1
endoplasmic reticulum 1
plasma membrane 1
golgi 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus, secretory
BaCelLo:	nucleus
EpiLoc:	vacuole
MultiLoc:	cytosol
Plant-mPloc:	cytosol, nucleus
PProwler:	mitochondrion
TargetP:	secretory
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX86332	Canola	cytosol	99.55	99.55
AT5G47960.1	Thale cress	cytosol	94.17	94.17
VIT_13s0064g01300.t01	Wine grape	cytosol	82.51	81.42
Zm00001d005504_P001	Maize	cytosol, extracellular	81.61	80.53
EER96479	Sorghum	cytosol	81.61	80.53
GSMUA_Achr3P11810_001	Banana	cytosol	79.82	79.11
Bra038701.1-P	Field mustard	cytosol	78.48	78.83
GSMUA_Achr1P19620_001	Banana	cytosol	80.72	77.92
TraesCS5D01G179100.1	Wheat	cytosol	78.92	77.88
TraesCS5A01G176000.1	Wheat	cytosol	78.92	77.88
Bra001439.1-P	Field mustard	cytosol	77.13	77.83
TraesCS5B01G171900.1	Wheat	cytosol	78.48	77.43
Bra009040.1-P	Field mustard	cytosol	68.61	68.61
Bra037810.1-P	Field mustard	cytosol	68.16	67.56
Bra011818.1-P	Field mustard	cytosol	66.82	66.82
Bra034771.1-P	Field mustard	cytosol	78.48	66.54
Bra020334.1-P	Field mustard	cytosol	62.78	64.52
Bra002589.1-P	Field mustard	cytosol	60.09	61.75
Bra010860.1-P	Field mustard	cytosol	59.19	61.4
Bra018190.1-P	Field mustard	cytosol	58.74	60.37
Bra030105.1-P	Field mustard	cytosol	58.74	60.09
Bra032914.1-P	Field mustard	cytosol	58.74	60.09
Bra020006.1-P	Field mustard	cytosol	58.3	59.91
Bra026016.1-P	Field mustard	cytosol	57.85	59.72
Bra015578.1-P	Field mustard	cytosol	57.85	59.72
Bra001581.1-P	Field mustard	cytosol	57.85	59.17
Bra012597.1-P	Field mustard	cytosol	57.4	58.99
Bra021589.1-P	Field mustard	cytosol	57.4	58.72
Bra022959.1-P	Field mustard	cytosol	56.95	58.26
Bra021009.1-P	Field mustard	cytosol	56.5	58.06
Bra033277.1-P	Field mustard	cytosol	60.09	56.54
Bra032424.1-P	Field mustard	cytosol	56.05	56.05
Bra031573.1-P	Field mustard	cytosol	57.4	50.0

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra037516	EnsemblPlants:Bra037516.1	EnsemblPlants:Bra037516.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4F8V4	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF647	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000253F8B3	:

Description

AT5G47960 (E=5e-116) SMG1, ATRABA4C | ATRABA4C; GTP binding

Coordinates

chrA06:+:21103433..21104257

Molecular Weight (calculated)

24795.5 Da

IEP (calculated)

6.796

GRAVY (calculated)

-0.271

Length

223 amino acids

Sequence
(BLAST)

001: MSNLHTNFNQ KIDYVFKVVL IGDSAVGKSQ LLARFSRNEF SIESKATIGV EFQTRTLTID NKTVKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDITKR
101: QSFDHVARWL EELRGHADKN IVIMLVGNKT DLGTLRAVPT EDAKEFAQRE NLFFMETSAL DSINVEPSFL TVLTEIYRIV SKKNLVANEE GESGGDSSLL
201: QGTKIVVPGE EAEAKGKRCC GTS

Best Arabidopsis Sequence Match ( AT5G47960.1 )
(BLAST)

001: MSKFQSNFNQ KIDYVFKVVL IGDSAVGKSQ LLARFSRNEF SIESKATIGV EFQTRTLEID RKTIKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDITKR
101: QSFDHVARWL EELRGHADKN IVIMLIGNKT DLGTLRAVPT EDAKEFAQRE NLFFMETSAL DSNNVEPSFL TVLTEIYRIV SKKNLVANEE GESGGDSSLL
201: QGTKIVVAGE ETESKGKGCC GTS

Arabidopsis Description

RABA4CSMG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.