Factsheet for Bra015578.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY06703	Canola	cytosol	99.54	99.54
AT1G07410.1	Thale cress	cytosol	95.83	96.73
Bra018190.1-P	Field mustard	cytosol	87.96	87.56
KRH29738	Soybean	endoplasmic reticulum	86.11	86.11
Solyc06g005810.2.1	Tomato	cytosol, unclear	85.65	85.65
PGSC0003DMT400053686	Potato	cytosol	85.65	85.65
KRH24729	Soybean	endoplasmic reticulum, nucleus	85.65	85.65
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	85.65	85.25
Bra002589.1-P	Field mustard	cytosol	85.65	85.25
Bra020334.1-P	Field mustard	cytosol	85.65	85.25
Solyc06g076450.2.1	Tomato	plastid	83.8	84.19
PGSC0003DMT400078200	Potato	cytosol	83.8	84.19
Bra031573.1-P	Field mustard	cytosol	93.06	78.52
Bra020006.1-P	Field mustard	cytosol	75.0	74.65
Bra026016.1-P	Field mustard	cytosol	66.67	66.67
Bra021589.1-P	Field mustard	cytosol	66.2	65.6
Bra001581.1-P	Field mustard	cytosol	66.2	65.6
Bra010860.1-P	Field mustard	cytosol	63.43	63.72
Bra030105.1-P	Field mustard	cytosol	62.96	62.39
Bra032914.1-P	Field mustard	cytosol	62.5	61.93
Bra012597.1-P	Field mustard	cytosol	62.04	61.75
Bra021009.1-P	Field mustard	cytosol	62.04	61.75
Bra022959.1-P	Field mustard	cytosol	62.04	61.47
Bra032424.1-P	Field mustard	cytosol	62.96	60.99
Bra001439.1-P	Field mustard	cytosol	60.19	58.82
Bra009040.1-P	Field mustard	cytosol	60.19	58.3
Bra038701.1-P	Field mustard	cytosol	59.72	58.11
Bra037516.1-P	Field mustard	cytosol	59.72	57.85
Bra037810.1-P	Field mustard	cytosol	59.72	57.33
Bra011818.1-P	Field mustard	cytosol	57.87	56.05
Bra034771.1-P	Field mustard	cytosol	59.26	48.67
Bra033277.1-P	Field mustard	cytosol	50.93	46.41

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EnsemblPlantsGene:Bra015578	EnsemblPlants:Bra015578.1	EnsemblPlants:Bra015578.1-P	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:M4DGF4	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002544D80	:	:

Description

AT1G07410 (E=8e-113) ATRABA2B, RAB-A2B, ATRAB-A2B | ATRABA2B (ARABIDOPSIS RAB GTPASE HOMOLOG A2B); GTP binding / GTPase/ protein binding

Coordinates

chrA10:-:905702..906428

Molecular Weight (calculated)

23834.2 Da

IEP (calculated)

6.936

GRAVY (calculated)

-0.263

Length

216 amino acids

Sequence
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTSGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAS NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LQVPGQGTAI
201: NITDSSVAKS KGCCST

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.