Factsheet for PGSC0003DMT400078200

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g076450.2.1	Tomato	plastid	97.67	97.67
PGSC0003DMT400053686	Potato	cytosol	91.16	90.74
KRH29738	Soybean	endoplasmic reticulum	89.3	88.89
KRH24729	Soybean	endoplasmic reticulum, nucleus	88.84	88.43
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	88.37	87.56
Bra018190.1-P	Field mustard	cytosol	87.44	86.64
AT1G07410.1	Thale cress	cytosol	85.58	85.98
PGSC0003DMT400055848	Potato	cytosol	85.12	85.51
AT3G46830.1	Thale cress	cytosol	86.05	85.25
AT5G59150.1	Thale cress	cytosol	86.05	85.25
Bra002589.1-P	Field mustard	cytosol	85.12	84.33
CDY33014	Canola	cytosol	85.12	84.33
CDY06703	Canola	cytosol	84.65	84.26
PGSC0003DMT400069776	Potato	cytosol	84.19	84.19
CDY06256	Canola	cytosol	83.72	84.11
CDY09919	Canola	cytosol	83.72	84.11
Bra015578.1-P	Field mustard	cytosol	84.19	83.8
Bra020334.1-P	Field mustard	cytosol	84.19	83.41
CDY32661	Canola	cytosol	84.19	83.41
CDY02867	Canola	cytosol	84.19	83.41
CDY71720	Canola	cytosol	83.72	82.95
PGSC0003DMT400064102	Potato	cytosol	73.49	73.83
CDX86101	Canola	cytosol	87.44	73.44
CDX80299	Canola	cytosol	85.58	71.32
PGSC0003DMT400024319	Potato	cytosol	70.7	70.05
Bra031573.1-P	Field mustard	cytosol	82.33	69.14
PGSC0003DMT400020208	Potato	cytosol	68.84	68.2
PGSC0003DMT400058784	Potato	cytosol	66.98	66.98
CDX99094	Canola	cytosol	87.44	65.51
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	66.05	65.44
PGSC0003DMT400033395	Potato	cytosol	65.58	65.28
PGSC0003DMT400073077	Potato	cytosol	64.65	64.06
PGSC0003DMT400045950	Potato	cytosol	71.16	60.0
PGSC0003DMT400041813	Potato	cytosol	61.86	59.38
PGSC0003DMT400060649	Potato	cytosol	60.93	59.01
PGSC0003DMT400033664	Potato	cytosol	60.47	58.04
PGSC0003DMT400021064	Potato	cytosol	60.93	57.96
PGSC0003DMT400065028	Potato	cytosol	60.0	57.08
PGSC0003DMT400000356	Potato	cytosol	55.81	49.79

Protein Annotations

EntrezGene:102603180	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1CZL4	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400030425	PGSC:PGSC0003DMG400030425	EnsemblPlants:PGSC0003DMT400078200	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000295937D
RefSeq:XP_006350793.1	:	:	:	:	:

Description

RabA2 [Source:PGSC_GENE;Acc:PGSC0003DMG400030425]

Coordinates

chr6:-:56841442..56843552

Molecular Weight (calculated)

23826.2 Da

IEP (calculated)

6.280

GRAVY (calculated)

-0.259

Length

215 amino acids

Sequence
(BLAST)

001: MANKVDHEYD YLFKIVVIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNVLRWLREL RDHADSNIVI IMAGNKSDLR HLRAVSEQDG QTLAEKEGLS FLETSALEAF NVDKAFQTIL TDIYQIISKK ALAAQEADST ALPGEGTTIN
201: VSDNSANVKR GCCST

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.