Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
- peroxisome 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| PGSC0003DMT400034320 | |
| PGSC0003DMT400041063 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G01200.1 | PGSC0003DMT400034320 | AT2G38360.1 | 21798944 |
| AT1G01200.1 | PGSC0003DMT400041063 | AT2G38360.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc01g096220.2.1 | Tomato | plastid | 94.61 | 93.83 |
| KRH06418 | Soybean | cytosol | 77.18 | 76.23 |
| KRH47850 | Soybean | cytosol | 76.76 | 75.51 |
| KRH68938 | Soybean | cytosol | 73.86 | 75.42 |
| KRG97215 | Soybean | cytosol | 73.44 | 75.0 |
| VIT_15s0048g03000.t01 | Wine grape | cytosol | 73.44 | 74.06 |
| AT1G01200.1 | Thale cress | cytosol | 68.05 | 69.2 |
| GSMUA_Achr9P00860_001 | Banana | cytosol | 65.56 | 68.7 |
| Bra033277.1-P | Field mustard | cytosol | 66.39 | 67.51 |
| CDY15192 | Canola | cytosol | 66.39 | 67.51 |
| CDX90017 | Canola | cytosol | 66.39 | 67.51 |
| PGSC0003DMT400041813 | Potato | cytosol | 61.41 | 66.07 |
| PGSC0003DMT400060649 | Potato | cytosol | 60.17 | 65.32 |
| GSMUA_Achr3P13850_001 | Banana | cytosol | 63.07 | 64.96 |
| TraesCS7B01G287900.1 | Wheat | cytosol | 59.34 | 63.84 |
| Os06t0714600-01 | Rice | cytosol | 58.92 | 63.11 |
| TraesCS7D01G381500.1 | Wheat | cytosol | 58.51 | 62.95 |
| HORVU5Hr1G080990.3 | Barley | cytosol, plasma membrane, vacuole | 57.26 | 62.44 |
| Os09t0527600-01 | Rice | cytosol, plasma membrane | 61.41 | 61.92 |
| PGSC0003DMT400065028 | Potato | cytosol | 57.68 | 61.5 |
| EER90389 | Sorghum | cytosol | 52.28 | 60.29 |
| PGSC0003DMT400033664 | Potato | cytosol | 56.02 | 60.27 |
| PGSC0003DMT400021064 | Potato | cytosol | 56.43 | 60.18 |
| TraesCS5D01G321800.1 | Wheat | cytosol | 60.17 | 59.18 |
| PGSC0003DMT400020208 | Potato | cytosol | 53.11 | 58.99 |
| TraesCS5B01G316300.1 | Wheat | cytosol | 60.58 | 58.87 |
| HORVU7Hr1G091490.3 | Barley | cytosol | 55.19 | 58.33 |
| TraesCS5A01G315700.1 | Wheat | cytosol | 59.75 | 58.3 |
| PGSC0003DMT400069776 | Potato | cytosol | 51.45 | 57.67 |
| Zm00001d021246_P002 | Maize | cytosol | 58.92 | 57.26 |
| PGSC0003DMT400055848 | Potato | cytosol | 50.62 | 57.01 |
| PGSC0003DMT400073077 | Potato | cytosol | 51.04 | 56.68 |
| PGSC0003DMT400024319 | Potato | cytosol | 51.04 | 56.68 |
| PGSC0003DMT400064102 | Potato | cytosol | 50.21 | 56.54 |
| PGSC0003DMT400033395 | Potato | cytosol | 50.62 | 56.48 |
| PGSC0003DMT400053686 | Potato | cytosol | 50.62 | 56.48 |
| PGSC0003DMT400058784 | Potato | cytosol | 50.21 | 56.28 |
| PGSC0003DMT400039780 | Potato | cytosol, mitochondrion | 50.62 | 56.22 |
| EER97073 | Sorghum | cytosol | 59.34 | 55.86 |
| PGSC0003DMT400078200 | Potato | cytosol | 49.79 | 55.81 |
| PGSC0003DMT400045950 | Potato | cytosol | 50.21 | 47.45 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | UniProt:M0ZGL2 | InterPro:P-loop_NTPase | PFAM:PF00071 |
| EnsemblPlantsGene:PGSC0003DMG400000124 | PGSC:PGSC0003DMG400000124 | EnsemblPlants:PGSC0003DMT400000356 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 |
| PANTHER:PTHR24073:SF345 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000295DCAB | : | : |
Description
RAB11B [Source:PGSC_GENE;Acc:PGSC0003DMG400000124]
Coordinates
chr1:+:73791371..73793494
Molecular Weight (calculated)
26945.1 Da
IEP (calculated)
6.366
GRAVY (calculated)
-0.210
Length
241 amino acids
Sequence
(BLAST)
(BLAST)
001: MSGVEDQKQQ DQMKRVNGVH HNEDKIDYVF KVVVIGDSAV GKTQVLSRFA KNEFCFDSKS TIGVEFQTRT VSIQSKVIKA QIWDTAGQER YRAVTSAYYR
101: GALGAMLVYD ITKRQTFDHV ARWVEELRAH ADSSIVIMLI GNKADLVDSR AVPTEDAVEF AERQGLFFSE TSALSGHNVE SAFLKLLEEI FDMVSRKTLL
201: VANGNYLKET NNGLLKGLKI DVISAPDFEV SEMKKLSSCS C
101: GALGAMLVYD ITKRQTFDHV ARWVEELRAH ADSSIVIMLI GNKADLVDSR AVPTEDAVEF AERQGLFFSE TSALSGHNVE SAFLKLLEEI FDMVSRKTLL
201: VANGNYLKET NNGLLKGLKI DVISAPDFEV SEMKKLSSCS C
001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
Arabidopsis Description
RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.