Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 4
- mitochondrion 1
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr9P00860_001 | Banana | cytosol | 80.34 | 81.74 |
| Os09t0527600-01 | Rice | cytosol, plasma membrane | 70.09 | 68.62 |
| EER90389 | Sorghum | cytosol | 61.11 | 68.42 |
| Os06t0714600-01 | Rice | cytosol | 64.96 | 67.56 |
| HORVU5Hr1G080990.3 | Barley | cytosol, plasma membrane, vacuole | 63.25 | 66.97 |
| TraesCS7B01G287900.1 | Wheat | cytosol | 64.1 | 66.96 |
| TraesCS7D01G381500.1 | Wheat | cytosol | 62.82 | 65.62 |
| KRG97215 | Soybean | cytosol | 65.81 | 65.25 |
| KRH68938 | Soybean | cytosol | 65.81 | 65.25 |
| VIT_15s0048g03000.t01 | Wine grape | cytosol | 65.81 | 64.44 |
| KRH06418 | Soybean | cytosol | 66.67 | 63.93 |
| TraesCS5D01G321800.1 | Wheat | cytosol | 66.67 | 63.67 |
| KRH47850 | Soybean | cytosol | 66.67 | 63.67 |
| TraesCS5B01G316300.1 | Wheat | cytosol | 67.09 | 63.31 |
| PGSC0003DMT400000356 | Potato | cytosol | 64.96 | 63.07 |
| TraesCS5A01G315700.1 | Wheat | cytosol | 65.81 | 62.35 |
| HORVU7Hr1G091490.3 | Barley | cytosol | 60.26 | 61.84 |
| AT1G01200.1 | Thale cress | cytosol | 62.39 | 61.6 |
| EER97073 | Sorghum | cytosol | 67.09 | 61.33 |
| Solyc01g096220.2.1 | Tomato | plastid | 63.68 | 61.32 |
| CDX90017 | Canola | cytosol | 61.97 | 61.18 |
| Bra033277.1-P | Field mustard | cytosol | 61.97 | 61.18 |
| Zm00001d021246_P002 | Maize | cytosol | 64.53 | 60.89 |
| CDY15192 | Canola | cytosol | 61.54 | 60.76 |
| GSMUA_Achr3P11810_001 | Banana | cytosol | 58.12 | 60.44 |
| GSMUA_Achr9P03770_001 | Banana | cytosol | 46.58 | 58.29 |
| GSMUA_Achr7P26890_001 | Banana | cytosol | 46.15 | 57.75 |
| GSMUA_Achr6P14930_001 | Banana | cytosol | 41.88 | 57.31 |
| GSMUA_Achr1P16540_001 | Banana | cytosol | 48.72 | 56.72 |
| GSMUA_Achr6P28910_001 | Banana | cytosol | 52.56 | 56.68 |
| GSMUA_Achr5P28770_001 | Banana | cytosol | 52.56 | 56.68 |
| GSMUA_Achr3P01690_001 | Banana | cytosol | 52.99 | 56.62 |
| GSMUA_Achr2P05630_001 | Banana | cytosol | 51.71 | 56.28 |
| GSMUA_Achr1P19620_001 | Banana | cytosol | 55.56 | 56.28 |
| GSMUA_Achr5P09130_001 | Banana | cytosol | 52.14 | 56.22 |
| GSMUA_Achr8P02230_001 | Banana | plasma membrane | 51.71 | 56.02 |
| GSMUA_Achr8P18090_001 | Banana | cytosol | 51.71 | 55.5 |
| GSMUA_Achr9P05610_001 | Banana | cytosol | 50.85 | 55.35 |
| GSMUA_Achr4P02760_001 | Banana | cytosol | 44.87 | 55.26 |
| GSMUA_Achr3P15540_001 | Banana | cytosol | 50.85 | 55.09 |
| GSMUA_Achr1P11940_001 | Banana | cytosol | 50.85 | 55.09 |
| GSMUA_Achr3P15680_001 | Banana | plasma membrane | 50.85 | 54.84 |
| GSMUA_Achr3P21290_001 | Banana | cytosol | 51.28 | 54.79 |
| GSMUA_Achr6P18430_001 | Banana | cytosol | 52.14 | 54.22 |
| GSMUA_Achr4P02540_001 | Banana | cytosol | 44.44 | 54.17 |
| GSMUA_Achr8P27180_001 | Banana | cytosol | 49.15 | 53.24 |
| GSMUA_Achr8P27780_001 | Banana | cytosol | 40.6 | 52.78 |
| GSMUA_Achr1P04780_001 | Banana | cytosol | 44.87 | 52.5 |
| GSMUA_Achr6P31790_001 | Banana | cytosol | 37.18 | 52.41 |
| GSMUA_Achr7P14790_001 | Banana | cytosol | 42.73 | 52.08 |
| GSMUA_Achr7P10970_001 | Banana | cytosol | 44.44 | 41.11 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | EnsemblPlantsGene:GSMUA_Achr3G13850_001 | EnsemblPlants:GSMUA_Achr3P13850_001 | EnsemblPlants:GSMUA_Achr3T13850_001 |
| UniProt:M0SEF2 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 | PFscan:PS51419 | PANTHER:PTHR24073 |
| PANTHER:PTHR24073:SF345 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 | SMART:SM00176 | SUPFAM:SSF52540 |
| InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | UniParc:UPI000296B3B6 | SEG:seg | : |
Description
Ras-related protein RGP1 [Source:GMGC_GENE;Acc:GSMUA_Achr3G13850_001]
Coordinates
chr3:+:12684353..12687517
Molecular Weight (calculated)
26333.4 Da
IEP (calculated)
4.602
GRAVY (calculated)
-0.206
Length
234 amino acids
Sequence
(BLAST)
(BLAST)
001: MMTREDDRGE EWEAEEIDYV FKIVVIGDSA VGKTQLLGRF TKDEFFLDSK STIGVEFQTR TLVLNRKRIK AQIWDTAGQE RYRAITSAYY RGALGAMLVY
101: DITKRQTFDH VVRWIDELRA NADNSIVVML IGNKSDLAKS RVVSTEDAME FAEEQGLFFS EASALSGDNV ETAFLRLLEE IYGVISRKAL ECDEATRNAT
201: NDVLTLKGTT LSVLSEVSMM ETSAMRKGTQ CACL
101: DITKRQTFDH VVRWIDELRA NADNSIVVML IGNKSDLAKS RVVSTEDAME FAEEQGLFFS EASALSGDNV ETAFLRLLEE IYGVISRKAL ECDEATRNAT
201: NDVLTLKGTT LSVLSEVSMM ETSAMRKGTQ CACL
001: MNEEMSGESP ENNKHVKKPT MPEKIDYVFK VVVIGDSAVG KTQLLSRFTH NEFCYDSKST IGVEFQTRTI TLRGKLVKAQ IWDTAGQERY RAVTSAYYRG
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
101: ALGAMVVYDI TKRLSFDHVA RWVEELRAHA DDSAVIMLVG NKADLSVGKR AVPTEDAVEF AETQRLFFSE VSALSGGNVD EAFFRLLEEI FSRVVVSRKA
201: MESDGGATVK LDGSRIDVIS GSDLETSNIK EQASCSC
Arabidopsis Description
RABA3RABA3 [Source:UniProtKB/TrEMBL;Acc:A0A178W3F7]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.