Factsheet for GSMUA_Achr6P31790_001

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr4P02540_001	Banana	cytosol	84.94	73.44
GSMUA_Achr9P05610_001	Banana	cytosol	92.77	71.63
GSMUA_Achr3P15680_001	Banana	plasma membrane	90.96	69.59
GSMUA_Achr8P27780_001	Banana	cytosol	68.67	63.33
AT1G16920.1	Thale cress	cytosol	81.93	62.96
CDY35128	Canola	cytosol	81.93	62.96
Bra026016.1-P	Field mustard	cytosol	80.72	62.04
CDX96799	Canola	cytosol	80.12	61.57
CDY40023	Canola	cytosol	79.52	61.11
GSMUA_Achr4P02760_001	Banana	cytosol	69.88	61.05
TraesCS3D01G289400.1	Wheat	cytosol	80.72	60.63
TraesCS3B01G324300.1	Wheat	cytosol, golgi	80.12	60.18
TraesCS3A01G289600.1	Wheat	cytosol	80.12	60.18
EES19812	Sorghum	cytosol	79.52	60.0
KRH27364	Soybean	endoplasmic reticulum	77.11	58.99
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	76.51	58.53
GSMUA_Achr7P14790_001	Banana	cytosol	67.47	58.33
GSMUA_Achr1P04780_001	Banana	cytosol	69.88	58.0
VIT_19s0014g01160.t01	Wine grape	extracellular	83.73	55.16
GSMUA_Achr3P15540_001	Banana	cytosol	69.88	53.7
GSMUA_Achr5P09130_001	Banana	cytosol	69.28	53.0
GSMUA_Achr1P11940_001	Banana	cytosol	68.67	52.78
GSMUA_Achr8P27180_001	Banana	cytosol	67.47	51.85
CDX81790	Canola	plastid	81.33	50.56
GSMUA_Achr9P03770_001	Banana	cytosol	53.61	47.59
GSMUA_Achr6P28910_001	Banana	cytosol	61.45	47.0
GSMUA_Achr5P28770_001	Banana	cytosol	61.45	47.0
HORVU3Hr1G071740.1	Barley	plastid	80.72	46.85
GSMUA_Achr6P14930_001	Banana	cytosol	48.19	46.78
GSMUA_Achr7P26890_001	Banana	cytosol	52.41	46.52
GSMUA_Achr2P05630_001	Banana	cytosol	60.24	46.51
GSMUA_Achr7P10970_001	Banana	cytosol	69.28	45.45
GSMUA_Achr6P18430_001	Banana	cytosol	61.45	45.33
GSMUA_Achr8P02230_001	Banana	plasma membrane	57.83	44.44
GSMUA_Achr3P11810_001	Banana	cytosol	59.04	43.56
GSMUA_Achr1P19620_001	Banana	cytosol	58.43	41.99
GSMUA_Achr8P18090_001	Banana	cytosol	53.61	40.83
GSMUA_Achr1P16540_001	Banana	cytosol	49.4	40.8
GSMUA_Achr3P01690_001	Banana	cytosol	53.61	40.64
GSMUA_Achr3P21290_001	Banana	cytosol	52.41	39.73
GSMUA_Achr3P13850_001	Banana	cytosol	52.41	37.18
GSMUA_Achr9P00860_001	Banana	cytosol	50.6	36.52

Protein Annotations

Gene3D:3.40.50.300	MapMan:35.1	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	EnsemblPlantsGene:GSMUA_Achr6G31790_001	EnsemblPlants:GSMUA_Achr6P31790_001	EnsemblPlants:GSMUA_Achr6T31790_001
UniProt:M0TBX4	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073
PANTHER:PTHR24073:SF544	SMART:SM00173	SMART:SM00174	SMART:SM00175	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI00029508FD	:	:	:

Description

Ras-related protein Rab11D [Source:GMGC_GENE;Acc:GSMUA_Achr6G31790_001]

Coordinates

chr6:+:31466202..31469063

Molecular Weight (calculated)

18352.7 Da

IEP (calculated)

8.645

GRAVY (calculated)

-0.323

Length

166 amino acids

Sequence
(BLAST)

001: MAGSWAEDDY DYLFKLSKST IGVEFATRSI SVDGKVLKAQ IWDTAGQERY RAITSAYYRG AVGALLVYDV TRRATFENVS RWLRELKDHT DPNIVVMLIG
101: NKSDLRHLVA VPTEDGKVLS QIYRIVSKRA VEAGDDAASS SVPSKGERIN VKDDASTQKK LGCCST

Best Arabidopsis Sequence Match ( AT1G06400.1 )
(BLAST)

001: MAGYRADEEY DYLFKLVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATKTTKVEGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LIYDVTRHAT
101: FENAARWLRE LRGHTDPNIV VMLIGNKCDL RHLVAVKTEE AKAFAERESL YFMETSALDA TNVENAFTEV LTQIHKIVSK RSVDGGGESA DLPGKGETIN
201: VKEDGSVLKR MGCCSN

Arabidopsis Description

RABA1ARas-related protein RABA1a [Source:UniProtKB/Swiss-Prot;Acc:P28185]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.