Factsheet for VIT_19s0014g01160.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

extracellular 4
endoplasmic reticulum 5
vacuole 4
plasma membrane 4
golgi 4
plastid 2
mitochondrion 1
nucleus 1
cytosol 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	extracellular
Any Predictor:	cytosol, mitochondrion, nucleus, plastid, secretory
BaCelLo:	secretory
EpiLoc:	plastid
iPSORT:	mitochondrion
MultiLoc:	endoplasmic reticulum
Plant-mPloc:	cytosol, nucleus
Predotar:	secretory
PProwler:	secretory
TargetP:	secretory
WoLF PSORT:	plastid
YLoc:	cytosol

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27364	Soybean	endoplasmic reticulum	79.76	92.63
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	78.57	91.24
GSMUA_Achr4P02540_001	Banana	cytosol	67.86	89.06
AT1G16920.1	Thale cress	cytosol	76.19	88.89
CDY35128	Canola	cytosol	76.19	88.89
Bra026016.1-P	Field mustard	cytosol	75.0	87.5
CDY40023	Canola	cytosol	75.0	87.5
GSMUA_Achr9P05610_001	Banana	cytosol	74.6	87.44
GSMUA_Achr3P15680_001	Banana	plasma membrane	74.6	86.64
CDX96799	Canola	cytosol	74.21	86.57
GSMUA_Achr8P27780_001	Banana	cytosol	60.71	85.0
EES19812	Sorghum	cytosol	73.81	84.55
GSMUA_Achr6P31790_001	Banana	cytosol	55.16	83.73
TraesCS3B01G324300.1	Wheat	cytosol, golgi	72.62	82.81
TraesCS3A01G289600.1	Wheat	cytosol	72.62	82.81
TraesCS3D01G289400.1	Wheat	cytosol	72.22	82.35
VIT_12s0028g02650.t01	Wine grape	cytosol	69.44	81.02
VIT_10s0003g00550.t01	Wine grape	cytosol	68.65	79.72
VIT_19s0014g01820.t01	Wine grape	cytosol	66.27	76.96
CDX81790	Canola	plastid	80.16	75.66
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	59.52	69.12
VIT_12s0035g01140.t01	Wine grape	extracellular	58.73	68.84
HORVU3Hr1G071740.1	Barley	plastid	75.4	66.43
VIT_13s0019g02470.t01	Wine grape	cytosol	58.73	61.41
VIT_13s0064g01300.t01	Wine grape	cytosol	54.37	60.62
VIT_08s0007g07800.t01	Wine grape	cytosol	52.38	59.19
VIT_07s0191g00030.t01	Wine grape	cytosol	50.79	56.64
VIT_15s0048g03000.t01	Wine grape	cytosol	49.21	51.88

Protein Annotations

EntrezGene:100265921	wikigene:100265921	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:AM471469	ProteinID:CAN75016
ProteinID:CAN75016.1	ProteinID:CCB46240	ProteinID:CCB46240.1	UniProt:F6H2M2	EMBL:FN595229	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0005773	GO:GO:0005774
GO:GO:0005886	GO:GO:0006810	GO:GO:0006950	GO:GO:0008150	GO:GO:0009628	GO:GO:0009987
GO:GO:0016020	GO:GO:0016787	GO:GO:0042538	GO:GO:0060627	EntrezGene:LOC100265921	wikigene:LOC100265921
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF592
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	SignalP:SignalP-noTM
InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGR:TC66312	TIGRFAMs:TIGR00231	UniParc:UPI0002108FD1	ArrayExpress:VIT_19s0014g01160
EnsemblPlantsGene:VIT_19s0014g01160	EnsemblPlants:VIT_19s0014g01160.t01	unigene:Vvi.15419	unigene:Vvi.17480	RefSeq:XP_002285495	RefSeq:XP_002285495.1
RefSeq:XP_003634661	RefSeq:XP_003634661.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr19:+:1293523..1301291

Molecular Weight (calculated)

28158.3 Da

IEP (calculated)

6.533

GRAVY (calculated)

-0.271

Length

252 amino acids

Sequence
(BLAST)

001: MILALFRHFS FFFLSSLVKQ PNKGFFRREE EASDMAGYRA EDDYDYLFKV VLIGDSGVGK SNLLSRFTKN EFNLESKSTI GVEFATRTLN VDGKVIKAQI
101: WDTAGQERYR AITSAYYRGA VGALLVYDVT RHATFENVDR WLKELRNHTD PNIVVMLVGN KSDLRHLVAV STEDGKTYAE RESLYFMETS ALEATNVENA
201: FAEVLTQIYR IVSKKSVEGG DEGAASSVPA KGERINVKDD ASALKRVGCC SG

Best Arabidopsis Sequence Match ( AT1G16920.1 )
(BLAST)

001: MAGYRVEDDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATRTLKVDGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENVDRWLKE LKNHTDPNIV VMLVGNKSDL RHLLAVPTED GKSYAEQESL CFMETSALEA TNVEDAFAEV LTQIYRITSK KQVEAGEDGN ASVPKGEKIE
201: VKNDVSALKK LGCCSN

Arabidopsis Description

RABA1BRABA1b [Source:UniProtKB/TrEMBL;Acc:A0A178WJV5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.