Factsheet for VIT_13s0064g01300.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
VIT_08s0007g07800.t01	Wine grape	cytosol	83.19	84.3
EER96479	Sorghum	cytosol	84.07	84.07
Zm00001d005504_P001	Maize	cytosol, extracellular	83.63	83.63
TraesCS5D01G179100.1	Wheat	cytosol	82.74	82.74
TraesCS5A01G176000.1	Wheat	cytosol	82.74	82.74
Bra037516.1-P	Field mustard	cytosol	81.42	82.51
CDX86332	Canola	cytosol	81.42	82.51
TraesCS5B01G171900.1	Wheat	cytosol	82.3	82.3
GSMUA_Achr3P11810_001	Banana	cytosol	81.86	82.22
CDY54519	Canola	cytosol	80.97	82.06
AT5G47960.1	Thale cress	cytosol	80.53	81.61
GSMUA_Achr1P19620_001	Banana	cytosol	80.53	78.79
VIT_07s0191g00030.t01	Wine grape	cytosol	76.11	76.11
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	61.5	64.06
VIT_12s0035g01140.t01	Wine grape	extracellular	59.29	62.33
VIT_10s0003g00550.t01	Wine grape	cytosol	59.73	62.21
VIT_19s0014g01820.t01	Wine grape	cytosol	58.41	60.83
VIT_15s0048g03000.t01	Wine grape	cytosol	63.72	60.25
VIT_12s0028g02650.t01	Wine grape	cytosol	57.52	60.19
VIT_13s0019g02470.t01	Wine grape	cytosol	60.18	56.43
VIT_19s0014g01160.t01	Wine grape	extracellular	60.62	54.37

Protein Annotations

EntrezGene:100246065	wikigene:100246065	MapMan:22.8.1.1	Gene3D:3.40.50.300	ProteinID:CBI24856	ProteinID:CBI24856.3
UniProt:D7T2X5	EMBL:FN595509	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005768	GO:GO:0005794	GO:GO:0016787	EntrezGene:LOC100246065	wikigene:LOC100246065	InterPro:P-loop_NTPase
PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF647	SMART:SM00173
SMART:SM00174	SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGR:TC69214	TIGRFAMs:TIGR00231	UniParc:UPI00015CE593	ArrayExpress:VIT_13s0064g01300	EnsemblPlantsGene:VIT_13s0064g01300
EnsemblPlants:VIT_13s0064g01300.t01	unigene:Vvi.9634	RefSeq:XP_002264293	RefSeq:XP_002264293.1	:	:

Description

No Description!

Coordinates

chr13:+:23174290..23183665

Molecular Weight (calculated)

25185.1 Da

IEP (calculated)

8.174

GRAVY (calculated)

-0.237

Length

226 amino acids

Sequence
(BLAST)

001: MSNFYKGDYS QKIDYVFKVV LIGDSAVGKS QLLARFARNE FNLDSKATIG VEFQTKTLVI DHKTVKAQIW DTAGQERYRA VTSAYYRGAV GAMLVYDITK
101: RQSFDHVARW LQELRGHADK NIVIMLVGNK SDLGTLQAVP TEDAKEFAER ENLFFMETSA LEATNVETAF LSVLTEIYRI ISKKTLVANE EVESGGNSSL
201: LKGTKIIVPG KEPKSEGSKY NCCLSS

Best Arabidopsis Sequence Match ( AT5G47960.1 )
(BLAST)

001: MSKFQSNFNQ KIDYVFKVVL IGDSAVGKSQ LLARFSRNEF SIESKATIGV EFQTRTLEID RKTIKAQIWD TAGQERYRAV TSAYYRGAVG AMLVYDITKR
101: QSFDHVARWL EELRGHADKN IVIMLIGNKT DLGTLRAVPT EDAKEFAQRE NLFFMETSAL DSNNVEPSFL TVLTEIYRIV SKKNLVANEE GESGGDSSLL
201: QGTKIVVAGE ETESKGKGCC GTS

Arabidopsis Description

RABA4CSMG1 [Source:UniProtKB/TrEMBL;Acc:A0A178UQI5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.