Factsheet for VIT_12s0035g01140.t01

Subcellular Localization

min:

: max

Winner_takes_all: extracellular

Predictor Summary:

nucleus 2
plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

extracellular: 27664331

msms PMID: 27664331 doi

P Pérez-Bermúdez, J Blesa, JM Soriano, A Marcilla

Departament de Biologia Vegetal, Facultat de Farmàcia, Universitat de València, Burjassot, Valencia, Spain., Grupo de Ciencias de la Alimentación Basada en la Evidencia y Experimentación (CiAlBEx), Instituto de Ciencias de los Materiales, Parque Científico, Universitat de València, Paterna, Spain; Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain., Unidad Mixta de Investigación en Endocrinología, Nutrición y Dietética Clínica, Instituto de Investigación Sanitaria La Fe-Universitat de València, Valencia, Spain; Àrea de Parasitologia, Departament de Farmàcia i Tecnologia Farmacèutica i Parasitologia, Universitat de València, Burjassot, Valencia, Spain. Electronic address: antonio.marcilla@uv.es.

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_02s0012g01860.t01
VIT_07s0031g00460.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	VIT_07s0031g00460.t01	AT2G23420.1	21798944
AT1G09630.1	VIT_02s0012g01860.t01	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc01g103380.2.1	Tomato	nucleus	90.23	90.65
PGSC0003DMT400064102	Potato	cytosol	90.23	90.65
Bra020006.1-P	Field mustard	cytosol	90.23	89.4
AT1G09630.1	Thale cress	cytosol	90.23	89.4
CDY50888	Canola	cytosol	90.23	89.4
KRH26288	Soybean	endoplasmic reticulum	89.77	88.94
CDX93495	Canola	cytosol	89.77	88.94
KRH06049	Soybean	endoplasmic reticulum	88.84	88.43
GSMUA_Achr2P05630_001	Banana	cytosol	86.51	86.51
GSMUA_Achr6P28910_001	Banana	cytosol	84.65	83.87
OQU77196	Sorghum	cytosol	81.4	79.55
Os05t0105100-01	Rice	golgi, plasma membrane	80.93	79.09
GSMUA_Achr6P18430_001	Banana	cytosol	82.33	78.67
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	76.74	76.04
HORVU1Hr1G001920.2	Barley	cytosol	79.07	75.56
TraesCS1B01G018900.1	Wheat	cytosol	77.67	74.89
TraesCS1D01G013300.1	Wheat	cytosol	77.21	74.44
TraesCS1A01G015400.1	Wheat	cytosol	76.74	73.99
Os03t0843100-01	Rice	cytosol	76.74	73.99
Zm00001d005495_P001	Maize	extracellular, mitochondrion, plasma membrane	76.28	73.54
EER98344	Sorghum	cytosol	75.81	73.09
TraesCS5B01G530800.1	Wheat	cytosol	75.35	72.65
TraesCS4A01G343500.1	Wheat	cytosol	75.35	72.0
TraesCS5D01G529500.1	Wheat	cytosol	74.88	71.56
VIT_10s0003g00550.t01	Wine grape	cytosol	72.09	71.43
VIT_19s0014g01820.t01	Wine grape	cytosol	70.7	70.05
VIT_12s0028g02650.t01	Wine grape	cytosol	68.84	68.52
VIT_13s0019g02470.t01	Wine grape	cytosol	75.35	67.22
Zm00001d034802_P001	Maize	cytosol	67.91	62.39
Zm00001d034803_P001	Maize	cytosol	67.44	61.97
EER90540	Sorghum	cytosol	66.51	60.59
VIT_08s0007g07800.t01	Wine grape	cytosol	62.33	60.09
VIT_13s0064g01300.t01	Wine grape	cytosol	62.33	59.29
VIT_07s0191g00030.t01	Wine grape	cytosol	61.86	58.85
VIT_19s0014g01160.t01	Wine grape	extracellular	68.84	58.73
VIT_15s0048g03000.t01	Wine grape	cytosol	58.6	52.72
HORVU5Hr1G120210.4	Barley	plastid	75.35	51.27

Protein Annotations

EntrezGene:100259150	wikigene:100259150	MapMan:22.8.1.1	Gene3D:3.40.50.300	ProteinID:CBI29688	ProteinID:CBI29688.3
UniProt:D7TGR6	EMBL:FN595990	GO:GO:0000166	GO:GO:0000911	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005768	GO:GO:0005829	GO:GO:0005886	GO:GO:0007049	GO:GO:0008150
GO:GO:0009504	GO:GO:0009987	GO:GO:0016020	GO:GO:0016787	EntrezGene:LOC100259150	wikigene:LOC100259150
InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF613
SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom
InterPro:Small_GTPase	TIGR:TC70562	TIGRFAMs:TIGR00231	UniParc:UPI00015CC13E	ArrayExpress:VIT_12s0035g01140	EnsemblPlantsGene:VIT_12s0035g01140
EnsemblPlants:VIT_12s0035g01140.t01	unigene:Vvi.335	RefSeq:XP_002264444	RefSeq:XP_002264444.1	:	:

Description

No Description!

Coordinates

chr12:+:20949146..20952455

Molecular Weight (calculated)

23864.3 Da

IEP (calculated)

6.542

GRAVY (calculated)

-0.307

Length

215 amino acids

Sequence
(BLAST)

001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QGFAEKEGLS FIETSALEAT NVEKAFQTIL GEIYRIISKK TLSSDDPAPA GIKEGKTLVV
201: DGSDTNTKKT CCSSF

Best Arabidopsis Sequence Match ( AT1G09630.1 )
(BLAST)

001: MARRPDEEYD YLFKVVLIGD SGVGKSNLLS RFTRNEFCLE SKSTIGVEFA TRTLQVEGRT VKAQIWDTAG QERYRAITSA YYRGALGALL VYDVTKPTTF
101: ENVSRWLKEL RDHADSNIVI MLIGNKTDLK HLRAVATEDA QSYAEKEGLS FIETSALEAL NVEKAFQTIL SEVYRIISKK SISSDQTTAN ANIKEGQTID
201: VAATSESNAK KPCCSSS

Arabidopsis Description

RABA2ARas-related protein RABA2a [Source:UniProtKB/Swiss-Prot;Acc:O04486]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.