Factsheet for TraesCS1D01G013300.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS2A01G302400.1
TraesCS2A01G445100.1
TraesCS2B01G318300.2
TraesCS2B01G466100.1
TraesCS2D01G301100.1
TraesCS2D01G444000.1
TraesCS4A01G354500.1
TraesCS4A01G458600.1
TraesCS5B01G517900.3
TraesCS5D01G517600.1
TraesCS6A01G265600.1
TraesCS6B01G292900.1
TraesCS6D01G249000.1
TraesCS7A01G030900.2
TraesCS7D01G027100.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G09630.1	TraesCS2A01G302400.1	AT2G23420.1	21798944
AT1G09630.1	TraesCS2B01G318300.2	AT2G23420.1	21798944
AT1G09630.1	TraesCS2D01G301100.1	AT2G23420.1	21798944
AT1G09630.1	TraesCS4A01G354500.1	AT2G23420.1	21798944
AT1G09630.1	TraesCS5B01G517900.3	AT2G23420.1	21798944
AT1G09630.1	TraesCS5D01G517600.1	AT2G23420.1	21798944
AT1G09630.1	TraesCS2A01G445100.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS2B01G466100.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS2D01G444000.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS4A01G458600.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS6A01G265600.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS6B01G292900.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS6D01G249000.1	AT4G17720.1	21798944
AT1G09630.1	TraesCS7A01G030900.2	AT4G17720.1	21798944
AT1G09630.1	TraesCS7D01G027100.1	AT4G17720.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G018900.1	Wheat	cytosol	97.76	97.76
TraesCS1A01G015400.1	Wheat	cytosol	97.76	97.76
HORVU1Hr1G001920.2	Barley	cytosol	95.52	94.67
Os05t0105100-01	Rice	golgi, plasma membrane	87.89	89.09
OQU77196	Sorghum	cytosol	87.0	88.18
GSMUA_Achr2P05630_001	Banana	cytosol	78.92	81.86
GSMUA_Achr6P28910_001	Banana	cytosol	78.92	81.11
Solyc01g103380.2.1	Tomato	nucleus	74.89	78.04
PGSC0003DMT400064102	Potato	cytosol	74.89	78.04
Bra020006.1-P	Field mustard	cytosol	75.78	77.88
KRH26288	Soybean	endoplasmic reticulum	75.78	77.88
CDY50888	Canola	cytosol	75.78	77.88
CDX93495	Canola	cytosol	75.34	77.42
VIT_12s0035g01140.t01	Wine grape	extracellular	74.44	77.21
KRH06049	Soybean	endoplasmic reticulum	74.44	76.85
AT1G09630.1	Thale cress	cytosol	74.44	76.5
Solyc10g045550.1.1	Tomato	nucleus	73.09	75.81
TraesCS5D01G498600.1	Wheat	cytosol	68.61	71.16
GSMUA_Achr6P18430_001	Banana	cytosol	69.51	68.89
TraesCS3D01G357500.1	Wheat	cytosol	66.37	68.2
TraesCS5D01G188900.1	Wheat	cytosol	65.92	68.06
TraesCS1D01G405900.1	Wheat	cytosol	65.02	67.13
TraesCS7D01G368300.1	Wheat	cytosol	65.02	66.82
TraesCS5D01G529500.1	Wheat	cytosol	67.26	66.67
TraesCS7D01G289000.1	Wheat	cytosol	63.68	65.74
PGSC0003DMT400045950	Potato	cytosol	73.99	64.71
TraesCS3D01G244500.1	Wheat	cytosol	62.78	64.22
TraesCS3D01G289400.1	Wheat	cytosol	62.78	63.35
TraesCS1D01G133200.1	Wheat	cytosol, plastid	61.44	63.13
TraesCS1D01G136900.1	Wheat	cytosol	56.5	58.33
TraesCS5D01G179100.1	Wheat	cytosol	55.61	54.87
TraesCS7D01G381500.1	Wheat	cytosol	51.12	50.89
TraesCS5D01G321800.1	Wheat	cytosol	51.12	46.53

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF613	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS1D01G013300
EnsemblPlants:TraesCS1D01G013300.1	TIGR:cd01868	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:6778701..6780017

Molecular Weight (calculated)

24170.5 Da

IEP (calculated)

5.041

GRAVY (calculated)

-0.289

Length

223 amino acids

Sequence
(BLAST)

001: MAGGGGRGRG EEEYDYLFKV VLIGDSGVGK SNLLSRFTRN EFCLESKSTI GVEFATRTLH VEEKIIKAQI WDTAGQERYR AITSAYYRGA LGAVLVYDVT
101: KPTTFENISR WLKELRDHAD ANIRIMLVGN KTDLKDLRAV PADDAGGYAE AEGLSYIETS ALEAMNVEEA FQLILGDIYR AVSKKAVASE EDRAGAAGVK
201: EGKTINVAAA ADNGGEKKQC CSA

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.