Factsheet for TraesCS1D01G133200.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

plastid: 16595579

msms PMID: 16595579 doi

Y Balmer, WH Vensel, FM DuPont, BB Buchanan, WJ Hurkman

Department of Plant and Microbial Biology, University of California, 111 Koshland Hall, Berkeley, CA 94720, USA.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1B01G150900.1	Wheat	cytosol	98.62	98.62
HORVU1Hr1G033390.2	Barley	cytosol	97.7	97.7
EES17935	Sorghum	cytosol	91.71	91.71
TraesCS5D01G498600.1	Wheat	cytosol	75.12	75.81
TraesCS3D01G357500.1	Wheat	cytosol	70.97	70.97
TraesCS5D01G188900.1	Wheat	cytosol	62.67	62.96
TraesCS7D01G368300.1	Wheat	cytosol	62.67	62.67
TraesCS5D01G529500.1	Wheat	cytosol	64.52	62.22
TraesCS7D01G289000.1	Wheat	cytosol	61.29	61.57
TraesCS1D01G013300.1	Wheat	cytosol	63.13	61.44
TraesCS1D01G405900.1	Wheat	cytosol	60.83	61.11
TraesCS3D01G289400.1	Wheat	cytosol	62.21	61.09
TraesCS1D01G136900.1	Wheat	cytosol	59.45	59.72
TraesCS3D01G244500.1	Wheat	cytosol	59.91	59.63
TraesCS5D01G179100.1	Wheat	cytosol	57.14	54.87
TraesCS7D01G381500.1	Wheat	cytosol	49.77	48.21
TraesCS5D01G321800.1	Wheat	cytosol	48.85	43.27

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924
GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF600	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	EnsemblPlantsGene:TraesCS1D01G133200
EnsemblPlants:TraesCS1D01G133200.1	TIGR:cd01868	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr1D:-:160902611..160904462

Molecular Weight (calculated)

23668.3 Da

IEP (calculated)

9.290

GRAVY (calculated)

-0.144

Length

217 amino acids

Sequence
(BLAST)

001: MGGRVDHEYS YLFKMVLIGD SGVGKSNILS RFTRNHFSLD SKSTIGVEFA TKSLQMEGKT IKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKKQSF
101: DNVNRWLREL RDHADSSIVI MMVGNKSDLT HLRAVSEDQG KALAEKEGLF FLETSAMEAV NVVEAFQTII TEVYGIVNKK ALAAKAAAAA AVPLPSQGKT
201: ISIDSTAGNS KKACCNT

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.