Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| TraesCS3A01G185700.1 | |
| TraesCS3B01G215300.1 | |
| TraesCS3D01G189700.1 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT5G60860.1 | TraesCS3A01G185700.1 | AT3G06540.1 | 21798944 |
| AT5G60860.1 | TraesCS3B01G215300.1 | AT3G06540.1 | 21798944 |
| AT5G60860.1 | TraesCS3D01G189700.1 | AT3G06540.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS7A01G285200.1 | Wheat | cytosol | 100.0 | 100.0 |
| TraesCS7B01G200600.1 | Wheat | cytosol | 99.54 | 99.54 |
| TraesCS5D01G188900.1 | Wheat | cytosol | 96.3 | 96.3 |
| TraesCS1D01G405900.1 | Wheat | cytosol | 93.98 | 93.98 |
| VIT_10s0003g00550.t01 | Wine grape | cytosol | 92.59 | 92.17 |
| VIT_19s0014g01820.t01 | Wine grape | cytosol | 92.13 | 91.71 |
| AT5G60860.1 | Thale cress | cytosol | 92.13 | 91.71 |
| Solyc07g053480.2.1 | Tomato | cytosol, plastid | 92.13 | 91.71 |
| PGSC0003DMT400024319 | Potato | cytosol | 92.13 | 91.71 |
| KRH20359 | Soybean | cytosol, endoplasmic reticulum | 91.67 | 91.24 |
| PGSC0003DMT400020208 | Potato | cytosol | 90.28 | 89.86 |
| KRH50137 | Soybean | cytosol, mitochondrion | 90.28 | 89.86 |
| KRH25681 | Soybean | cytosol | 90.28 | 89.86 |
| KRH30863 | Soybean | cytosol | 89.81 | 89.4 |
| Solyc12g010790.1.1 | Tomato | cytosol, nucleus, unclear | 89.81 | 89.4 |
| KRH55839 | Soybean | endoplasmic reticulum | 89.81 | 89.4 |
| KRH32712 | Soybean | cytosol, endoplasmic reticulum, mitochondrion | 88.89 | 88.48 |
| AT3G15060.1 | Thale cress | cytosol | 88.43 | 88.02 |
| CDX82451 | Canola | cytosol | 87.96 | 87.16 |
| Bra001581.1-P | Field mustard | cytosol | 87.96 | 87.16 |
| Solyc12g014080.1.1 | Tomato | cytosol | 87.04 | 86.64 |
| CDX75804 | Canola | cytosol | 87.04 | 86.24 |
| PGSC0003DMT400039780 | Potato | cytosol, mitochondrion | 86.57 | 86.18 |
| Bra032914.1-P | Field mustard | cytosol | 86.11 | 85.32 |
| CDY30818 | Canola | cytosol | 86.11 | 85.32 |
| CDY34094 | Canola | cytosol | 86.11 | 85.32 |
| VIT_12s0028g02650.t01 | Wine grape | cytosol | 85.19 | 85.19 |
| CDX90160 | Canola | cytosol | 84.72 | 85.12 |
| Bra010860.1-P | Field mustard | cytosol | 84.72 | 85.12 |
| CDY35757 | Canola | cytosol | 85.19 | 84.4 |
| Bra021589.1-P | Field mustard | cytosol | 85.19 | 84.4 |
| CDY20100 | Canola | cytosol | 85.19 | 84.4 |
| CDX94631 | Canola | cytosol | 85.19 | 84.4 |
| Bra030105.1-P | Field mustard | cytosol | 85.19 | 84.4 |
| AT1G28550.1 | Thale cress | cytosol | 84.72 | 83.94 |
| CDY15659 | Canola | cytosol | 84.72 | 83.94 |
| PGSC0003DMT400033395 | Potato | cytosol | 83.8 | 83.8 |
| CDX79548 | Canola | cytosol | 76.39 | 83.76 |
| AT2G33870.1 | Thale cress | cytosol | 84.26 | 83.49 |
| Solyc03g006270.2.1 | Tomato | cytosol | 83.33 | 83.33 |
| PGSC0003DMT400058784 | Potato | cytosol | 82.41 | 82.79 |
| Bra022959.1-P | Field mustard | cytosol | 83.33 | 82.57 |
| Solyc10g008840.2.1 | Tomato | cytosol | 81.94 | 82.33 |
| GSMUA_Achr7P14790_001 | Banana | cytosol | 72.69 | 81.77 |
| TraesCS3D01G244500.1 | Wheat | cytosol | 81.02 | 80.28 |
| TraesCS7D01G368300.1 | Wheat | cytosol | 80.09 | 79.72 |
| AT4G18430.1 | Thale cress | cytosol | 79.63 | 79.26 |
| CDY01540 | Canola | cytosol | 79.17 | 78.8 |
| CDY55638 | Canola | cytosol | 79.17 | 78.8 |
| KRH27001 | Soybean | cytosol, endoplasmic reticulum | 79.17 | 78.44 |
| Bra012597.1-P | Field mustard | cytosol | 78.7 | 78.34 |
| CDX76522 | Canola | cytosol | 78.7 | 78.34 |
| Bra021009.1-P | Field mustard | cytosol | 78.24 | 77.88 |
| KRH22324 | Soybean | cytosol, endoplasmic reticulum | 78.24 | 77.52 |
| TraesCS3D01G289400.1 | Wheat | cytosol | 74.54 | 72.85 |
| CDY60884 | Canola | cytosol | 73.61 | 71.3 |
| TraesCS3D01G357500.1 | Wheat | cytosol | 65.74 | 65.44 |
| TraesCS5D01G498600.1 | Wheat | cytosol | 64.81 | 65.12 |
| TraesCS1D01G013300.1 | Wheat | cytosol | 65.74 | 63.68 |
| TraesCS5D01G529500.1 | Wheat | cytosol | 66.2 | 63.56 |
| TraesCS1D01G133200.1 | Wheat | cytosol, plastid | 61.57 | 61.29 |
| TraesCS1D01G136900.1 | Wheat | cytosol | 58.8 | 58.8 |
| GSMUA_Achr7P10970_001 | Banana | cytosol | 68.06 | 58.1 |
| TraesCS5D01G179100.1 | Wheat | cytosol | 58.8 | 56.19 |
| TraesCS7D01G381500.1 | Wheat | cytosol | 52.78 | 50.89 |
| TraesCS5D01G321800.1 | Wheat | cytosol | 53.7 | 47.35 |
Protein Annotations
| MapMan:22.8.1.1 | Gene3D:3.40.50.300 | GO:GO:0000166 | GO:GO:0003674 | GO:GO:0003824 | GO:GO:0003924 |
| GO:GO:0005488 | GO:GO:0005525 | GO:GO:0016787 | InterPro:P-loop_NTPase | PFAM:PF00071 | PRINTS:PR00449 |
| PFscan:PS51419 | PANTHER:PTHR24073 | PANTHER:PTHR24073:SF346 | SMART:SM00173 | SMART:SM00174 | SMART:SM00175 |
| SMART:SM00176 | SUPFAM:SSF52540 | InterPro:Small_GTP-bd_dom | InterPro:Small_GTPase | TIGRFAMs:TIGR00231 | EnsemblPlantsGene:TraesCS7D01G289000 |
| EnsemblPlants:TraesCS7D01G289000.1 | TIGR:cd01868 | : | : | : | : |
Description
No Description!
Coordinates
chr7D:+:327401191..327419199
Molecular Weight (calculated)
24126.5 Da
IEP (calculated)
5.413
GRAVY (calculated)
-0.251
Length
216 amino acids
Sequence
(BLAST)
(BLAST)
001: MAYRADDDYD YLFKVVLIGD SGVGKSNLLT RFTRNEFSLE SKSTIGVEFA TRSIRVDDKV VKAQIWDTAG QERYRAITSA YYRGAVGALV VYDVTRHVTF
101: ENVERWLKEL KDHTDANIVI MLVGNKADLR HLRAVSVEDA KAFAEREYTF FMETSALESM NVEDAFTEVL TQIYRVVSKK ALDIGDDPAA PPRGQTINVG
201: SKDDVSAVKK AGCCSS
101: ENVERWLKEL KDHTDANIVI MLVGNKADLR HLRAVSVEDA KAFAEREYTF FMETSALESM NVEDAFTEVL TQIYRVVSKK ALDIGDDPAA PPRGQTINVG
201: SKDDVSAVKK AGCCSS
001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN
Arabidopsis Description
RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.