CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH27001	Soybean	cytosol, endoplasmic reticulum	96.33	96.33
KRH50137	Soybean	cytosol, mitochondrion	83.49	83.87
KRH20359	Soybean	cytosol, endoplasmic reticulum	82.57	82.95
KRH25681	Soybean	cytosol	82.11	82.49
KRH55839	Soybean	endoplasmic reticulum	81.65	82.03
KRH30863	Soybean	cytosol	81.19	81.57
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	80.73	81.11
Solyc07g053480.2.1	Tomato	cytosol, plastid	80.28	80.65
PGSC0003DMT400024319	Potato	cytosol	80.28	80.65
PGSC0003DMT400020208	Potato	cytosol	79.82	80.18
Os05t0564400-02	Rice	plasma membrane	79.36	79.72
Solyc12g010790.1.1	Tomato	cytosol, nucleus, unclear	78.9	79.26
OQU89311	Sorghum	cytosol	78.44	79.17
Os09t0327100-01	Rice	plasma membrane	78.44	79.17
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	77.98	78.7
TraesCS5A01G184100.1	Wheat	golgi, plastid	77.98	78.7
VIT_12s0028g02650.t01	Wine grape	cytosol	77.98	78.7
TraesCS7A01G285200.1	Wheat	cytosol	77.52	78.24
EES19950	Sorghum	cytosol	77.52	78.24
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	77.52	78.24
TraesCS7D01G289000.1	Wheat	cytosol	77.52	78.24
TraesCS5B01G182200.1	Wheat	cytosol	77.06	77.78
TraesCS5D01G188900.1	Wheat	cytosol	77.06	77.78
TraesCS7B01G200600.1	Wheat	cytosol	77.06	77.78
GSMUA_Achr3P15540_001	Banana	cytosol	77.06	77.78
GSMUA_Achr1P11940_001	Banana	cytosol	76.61	77.31
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	76.15	76.85
TraesCS1A01G398400.1	Wheat	cytosol	76.15	76.85
GSMUA_Achr5P09130_001	Banana	cytosol	76.15	76.5
TraesCS1D01G405900.1	Wheat	cytosol	75.69	76.39
TraesCS1B01G426300.1	Wheat	cytosol	75.69	76.39
GSMUA_Achr8P27180_001	Banana	cytosol	75.23	75.93
GSMUA_Achr4P02760_001	Banana	cytosol	65.14	74.74
KRH27364	Soybean	endoplasmic reticulum	73.85	74.19
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	73.85	74.19
GSMUA_Achr1P04780_001	Banana	cytosol	66.51	72.5
TraesCS3A01G247000.1	Wheat	cytosol	72.02	72.02
TraesCS3D01G244500.1	Wheat	cytosol	72.02	72.02
GSMUA_Achr7P14790_001	Banana	cytosol	63.3	71.88
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	71.1	71.1
KRH22259	Soybean	cytosol, nucleus	70.64	70.64
OQU87300	Sorghum	cytosol	70.64	70.32
Zm00001d043935_P001	Maize	cytosol	70.64	70.0
KRH26288	Soybean	endoplasmic reticulum	64.22	64.52
KRH06049	Soybean	endoplasmic reticulum	63.3	63.89
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	63.3	63.59
KRH15036	Soybean	cytosol, nucleus	62.39	62.96
KRH29738	Soybean	endoplasmic reticulum	62.39	62.96
KRH24729	Soybean	endoplasmic reticulum, nucleus	61.93	62.5
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	61.47	61.75
KRH71891	Soybean	cytosol	56.42	55.16
KRH33003	Soybean	cytosol	55.96	54.22
GSMUA_Achr7P10970_001	Banana	cytosol	62.39	53.75
KRG88929	Soybean	cytosol	54.59	53.36
KRH75359	Soybean	endoplasmic reticulum	54.59	53.36
KRH31313	Soybean	endoplasmic reticulum	54.13	52.91
KRH59301	Soybean	cytosol, endoplasmic reticulum	55.5	52.84
KRH36458	Soybean	cytosol	55.05	52.63
KRH27503	Soybean	cytosol	54.59	52.19
KRG97554	Soybean	cytosol, endoplasmic reticulum	52.29	51.12
KRH43151	Soybean	cytosol, endoplasmic reticulum	54.59	50.21
KRH06418	Soybean	cytosol	53.21	47.54
KRH47850	Soybean	cytosol	52.75	46.94
KRG97215	Soybean	cytosol	49.54	45.76
TraesCS3B01G272300.1	Wheat	cytosol	72.02	45.38
KRH68938	Soybean	cytosol	49.08	45.34

Protein Annotations

EntrezGene:100817378	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02008406	EnsemblPlantsGene:GLYMA_13G293200	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0016787	UniProt:I1M3P0
EnsemblPlants:KRH22324	ProteinID:KRH22324	ProteinID:KRH22324.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF872	SMART:SM00173	SMART:SM00174	SMART:SM00175
SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000233BC38

Description

hypothetical protein

Coordinates

chr13:+:39306388..39308830

Molecular Weight (calculated)

24344.7 Da

IEP (calculated)

4.784

GRAVY (calculated)

-0.261

Length

218 amino acids

Sequence
(BLAST)

001: MGADEDYDYL FKLVLIGDSG VGKSNLLSRF TRNEFSLETK STIGVEFATR SVPVDSKLVK AQIWDTAGQE RYRAITSAYY RGAVGALIVY DVTRHVTFEN
101: VERWLKELRD HTEAYVVVML VGNKADLRHL RAVSTEEATE YAEKENIYFM ETSALESLNV GNAFVEVLTQ IYNVVSRKTL ETMDDDPNSK ALPKGETIVI
201: GTKDDDVSAV KKSGCCST

Best Arabidopsis Sequence Match ( AT1G28550.1 )
(BLAST)

001: MGAYRAEDDY DYLFKVVLTG DSGVGKSNLL SRFTRNDFSH DSRATIGVEF ATRSIQCDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMLVGNKADL RHLRAISTEE AKAFAERENT FFMETSALEA VNVDNAFTEV LTQIYRVVSK KALEAGDDPT TALPKGQMIN
201: VGGRDDISAV KKPGCCSA

Arabidopsis Description

RABA1IRas-related protein RABA1i [Source:UniProtKB/Swiss-Prot;Acc:Q9S810]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.