CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, endoplasmic reticulum, nucleus, cytosol

Predictor Summary:

nucleus 2
plastid 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH22259	Soybean	cytosol, nucleus	98.62	98.62
Solyc07g055290.2.1	Tomato	plastid	84.86	84.86
KRH27364	Soybean	endoplasmic reticulum	81.65	82.03
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	81.19	81.57
AT1G06400.1	Thale cress	cytosol	80.73	81.48
Bra032424.1-P	Field mustard	cytosol	83.03	81.17
CDY06210	Canola	cytosol	83.03	81.17
CDY09976	Canola	cytosol	82.57	80.72
KRH50137	Soybean	cytosol, mitochondrion	76.61	76.96
KRH20359	Soybean	cytosol, endoplasmic reticulum	76.15	76.5
KRH55839	Soybean	endoplasmic reticulum	74.77	75.12
KRH30863	Soybean	cytosol	74.77	75.12
KRH25681	Soybean	cytosol	74.77	75.12
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	74.31	74.65
KRH27001	Soybean	cytosol, endoplasmic reticulum	72.02	72.02
KRH22324	Soybean	cytosol, endoplasmic reticulum	71.1	71.1
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	68.81	69.12
KRH15036	Soybean	cytosol, nucleus	68.35	68.98
KRH24729	Soybean	endoplasmic reticulum, nucleus	67.43	68.06
KRH29738	Soybean	endoplasmic reticulum	67.43	68.06
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	66.97	67.28
KRH26288	Soybean	endoplasmic reticulum	66.06	66.36
KRH06049	Soybean	endoplasmic reticulum	65.6	66.2
KRH71891	Soybean	cytosol	61.47	60.09
KRH31313	Soybean	endoplasmic reticulum	59.63	58.3
KRH33003	Soybean	cytosol	60.09	58.22
KRH75359	Soybean	endoplasmic reticulum	58.72	57.4
KRH59301	Soybean	cytosol, endoplasmic reticulum	60.09	57.21
KRG97554	Soybean	cytosol, endoplasmic reticulum	58.26	56.95
KRG88929	Soybean	cytosol	57.8	56.5
KRH43151	Soybean	cytosol, endoplasmic reticulum	60.09	55.27
KRH36458	Soybean	cytosol	53.67	51.32
KRH27503	Soybean	cytosol	53.67	51.32
KRH68938	Soybean	cytosol	54.13	50.0
KRG97215	Soybean	cytosol	54.13	50.0
KRH06418	Soybean	cytosol	55.5	49.59
KRH47850	Soybean	cytosol	54.59	48.57

Protein Annotations

MapMan:22.8.1.1	Gene3D:3.40.50.300	EntrezGene:547655	EMBL:ACUP02007765	EMBL:AF532626	EnsemblPlantsGene:GLYMA_12G212400
GO:GO:0000166	GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005768	GO:GO:0016787
EnsemblPlants:KRH27074	ProteinID:KRH27074	ProteinID:KRH27074.1	InterPro:P-loop_NTPase	PFAM:PF00071	PRINTS:PR00449
PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF544	UniProt:Q8LJR5	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI00000A3620	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr12:-:37135278..37140014

Molecular Weight (calculated)

24127.6 Da

IEP (calculated)

8.165

GRAVY (calculated)

-0.290

Length

218 amino acids

Sequence
(BLAST)

001: MAGYKGDDEY DYLFKLVLIG DSGVGKSNLL SRFTRNEFNL ESKSTIGVEF ATKSLNIDAK VIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRRAT
101: FENAARWLKE LRDHTDPNIV VMLIGNKSDL RHLVAVPTED GKSFAEKESL YFMETSALEA TNVENAFTEV LSQIYRIVSK RTVEAGKNAS SSAVPSKGQT
201: INVKDDSSVL KKIGCCSN

Best Arabidopsis Sequence Match ( AT1G06400.1 )
(BLAST)

001: MAGYRADEEY DYLFKLVLIG DSGVGKSNLL SRFTKNEFNL ESKSTIGVEF ATKTTKVEGK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LIYDVTRHAT
101: FENAARWLRE LRGHTDPNIV VMLIGNKCDL RHLVAVKTEE AKAFAERESL YFMETSALDA TNVENAFTEV LTQIHKIVSK RSVDGGGESA DLPGKGETIN
201: VKEDGSVLKR MGCCSN

Arabidopsis Description

RABA1ARas-related protein RABA1a [Source:UniProtKB/Swiss-Prot;Acc:P28185]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.