CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum

Predictor Summary:

nucleus 1
vacuole 1
cytosol 3
mitochondrion 1
plastid 1

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
endoplasmic reticulum: 27224218
endoplasmic reticulum: 28499913
mitochondrion: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH24729	Soybean	endoplasmic reticulum, nucleus	99.07	99.07
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	92.59	92.17
Solyc06g005810.2.1	Tomato	cytosol, unclear	91.67	91.67
PGSC0003DMT400053686	Potato	cytosol	91.67	91.67
Solyc06g076450.2.1	Tomato	plastid	88.89	89.3
PGSC0003DMT400078200	Potato	cytosol	88.89	89.3
AT3G46830.1	Thale cress	cytosol	88.43	88.02
Bra018190.1-P	Field mustard	cytosol	88.43	88.02
AT5G59150.1	Thale cress	cytosol	88.43	88.02
KRH15036	Soybean	cytosol, nucleus	87.96	87.96
AT1G07410.1	Thale cress	cytosol	87.04	87.85
CDY33014	Canola	cytosol	87.96	87.56
Bra002589.1-P	Field mustard	cytosol	87.5	87.1
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	87.5	87.1
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	87.04	86.64
CDY06703	Canola	cytosol	86.57	86.57
CDY02867	Canola	cytosol	86.57	86.18
CDY32661	Canola	cytosol	86.57	86.18
Bra020334.1-P	Field mustard	cytosol	86.57	86.18
Bra015578.1-P	Field mustard	cytosol	86.11	86.11
CDY06256	Canola	cytosol	85.19	85.98
CDY09919	Canola	cytosol	85.19	85.98
CDY71720	Canola	cytosol	85.65	85.25
CDX86101	Canola	cytosol	88.43	74.61
CDX80299	Canola	cytosol	88.43	74.03
KRH06049	Soybean	endoplasmic reticulum	73.61	73.61
KRH26288	Soybean	endoplasmic reticulum	73.61	73.27
Bra031573.1-P	Field mustard	cytosol	83.8	70.7
KRH20359	Soybean	cytosol, endoplasmic reticulum	69.44	69.12
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	68.98	68.66
KRH50137	Soybean	cytosol, mitochondrion	68.98	68.66
KRH27364	Soybean	endoplasmic reticulum	68.98	68.66
KRH25681	Soybean	cytosol	68.52	68.2
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	68.52	68.2
KRH22259	Soybean	cytosol, nucleus	68.52	67.89
KRH30863	Soybean	cytosol	68.06	67.74
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	68.06	67.43
KRH55839	Soybean	endoplasmic reticulum	67.59	67.28
CDX99094	Canola	cytosol	88.43	66.55
KRH27001	Soybean	cytosol, endoplasmic reticulum	62.96	62.39
KRH22324	Soybean	cytosol, endoplasmic reticulum	62.96	62.39
KRH31313	Soybean	endoplasmic reticulum	62.5	60.54
KRH59301	Soybean	cytosol, endoplasmic reticulum	63.43	59.83
KRG97554	Soybean	cytosol, endoplasmic reticulum	61.57	59.64
KRH75359	Soybean	endoplasmic reticulum	60.19	58.3
KRG88929	Soybean	cytosol	59.26	57.4
KRH71891	Soybean	cytosol	59.26	57.4
KRH43151	Soybean	cytosol, endoplasmic reticulum	62.5	56.96
KRH33003	Soybean	cytosol	59.26	56.89
KRH27503	Soybean	cytosol	56.94	53.95
KRH36458	Soybean	cytosol	56.02	53.07
KRH68938	Soybean	cytosol	56.48	51.69
KRG97215	Soybean	cytosol	56.02	51.27
KRH47850	Soybean	cytosol	57.87	51.02
KRH06418	Soybean	cytosol	57.41	50.82

Protein Annotations

EntrezGene:100799021	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02006818	EnsemblPlantsGene:GLYMA_11G135400	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:I1LJX8	EnsemblPlants:KRH29738	ProteinID:KRH29738	ProteinID:KRH29738.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase
TIGRFAMs:TIGR00231	UniParc:UPI000233D292	:	:	:	:

Description

hypothetical protein

Coordinates

chr11:+:10306588..10308854

Molecular Weight (calculated)

23800.1 Da

IEP (calculated)

6.676

GRAVY (calculated)

-0.268

Length

216 amino acids

Sequence
(BLAST)

001: MAHRVDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: DNVQRWLREL RDHADSNIVI MMAGNKSDLS HLRAVSEDDG QALAEREGLS FLETSALEAT NIEKAFQTIL TEIYHIVSKK ALAAQEAAVG TTLPGQGTTI
201: NVGDASGNTK RGCCST

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.