Factsheet for PGSC0003DMT400053686

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc06g005810.2.1	Tomato	cytosol, unclear	99.54	99.54
KRH29738	Soybean	endoplasmic reticulum	91.67	91.67
PGSC0003DMT400078200	Potato	cytosol	90.74	91.16
KRH24729	Soybean	endoplasmic reticulum, nucleus	90.74	90.74
VIT_06s0004g05550.t01	Wine grape	cytosol, extracellular	89.81	89.4
Bra018190.1-P	Field mustard	cytosol	89.35	88.94
AT3G46830.1	Thale cress	cytosol	87.96	87.56
CDY33014	Canola	cytosol	87.5	87.1
AT1G07410.1	Thale cress	cytosol	86.11	86.92
AT5G59150.1	Thale cress	cytosol	87.04	86.64
Bra002589.1-P	Field mustard	cytosol	87.04	86.64
CDY06703	Canola	cytosol	86.11	86.11
Bra015578.1-P	Field mustard	cytosol	85.65	85.65
CDY06256	Canola	cytosol	84.72	85.51
CDY09919	Canola	cytosol	84.72	85.51
Bra020334.1-P	Field mustard	cytosol	85.65	85.25
CDY02867	Canola	cytosol	85.65	85.25
CDY32661	Canola	cytosol	85.65	85.25
PGSC0003DMT400055848	Potato	cytosol	83.8	84.58
CDY71720	Canola	cytosol	84.72	84.33
PGSC0003DMT400069776	Potato	cytosol	83.33	83.72
CDX86101	Canola	cytosol	89.35	75.39
PGSC0003DMT400064102	Potato	cytosol	73.15	73.83
CDX80299	Canola	cytosol	87.5	73.26
PGSC0003DMT400024319	Potato	cytosol	70.83	70.51
Bra031573.1-P	Field mustard	cytosol	83.33	70.31
PGSC0003DMT400020208	Potato	cytosol	69.91	69.59
PGSC0003DMT400058784	Potato	cytosol	68.06	68.37
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	67.59	67.28
CDX99094	Canola	cytosol	89.35	67.25
PGSC0003DMT400033395	Potato	cytosol	66.2	66.2
PGSC0003DMT400073077	Potato	cytosol	65.28	64.98
PGSC0003DMT400041813	Potato	cytosol	62.96	60.71
PGSC0003DMT400045950	Potato	cytosol	71.3	60.39
PGSC0003DMT400060649	Potato	cytosol	60.65	59.01
PGSC0003DMT400021064	Potato	cytosol	61.57	58.85
PGSC0003DMT400065028	Potato	cytosol	60.65	57.96
PGSC0003DMT400033664	Potato	cytosol	59.72	57.59
PGSC0003DMT400000356	Potato	cytosol	56.48	50.62

Protein Annotations

EntrezGene:102591603	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1BVC3	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400020828	PGSC:PGSC0003DMG400020828	EnsemblPlants:PGSC0003DMT400053686	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SMART:SM00177	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296E773
RefSeq:XP_006358708.1	SEG:seg	:	:	:	:

Description

RabA2 [Source:PGSC_GENE;Acc:PGSC0003DMG400020828]

Coordinates

chr6:+:4149214..4152201

Molecular Weight (calculated)

23848.2 Da

IEP (calculated)

6.518

GRAVY (calculated)

-0.289

Length

216 amino acids

Sequence
(BLAST)

001: MGNRVDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKGQTF
101: DNVQRWLREL RDHADSNIVI MMAGNKSDLN HLRAVSEQDG QNLAEKEGLS FLETSALEAV NVDKAFQTIL TEIYHIISKK ALAAQAAATT TTLPGQGTTI
201: NVNDTSENVK RGCCST

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.