Factsheet for PGSC0003DMT400055848

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 1
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g079900.2.1	Tomato	cytosol	98.6	98.14
PGSC0003DMT400069776	Potato	cytosol	91.12	90.7
KRH15036	Soybean	cytosol, nucleus	86.45	85.65
PGSC0003DMT400078200	Potato	cytosol	85.51	85.12
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	85.51	84.33
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	85.51	84.33
PGSC0003DMT400053686	Potato	cytosol	84.58	83.8
HORVU5Hr1G114250.1	Barley	cytosol, plasma membrane	84.11	83.72
GSMUA_Achr6P14930_001	Banana	cytosol	66.82	83.63
Zm00001d034675_P002	Maize	cytosol	83.18	82.79
Os03t0823700-01	Rice	plasma membrane	83.18	82.79
KXG37238	Sorghum	cytosol	82.71	82.33
TraesCS5A01G485100.1	Wheat	cytosol, golgi	81.78	81.4
TraesCS5B01G498600.1	Wheat	cytosol, plastid	81.78	81.4
TraesCS5D01G498600.1	Wheat	cytosol	81.78	81.4
GSMUA_Achr9P03770_001	Banana	cytosol	70.56	80.75
GSMUA_Achr7P26890_001	Banana	cytosol	70.09	80.21
VIT_13s0019g02470.t01	Wine grape	cytosol	89.25	79.25
GSMUA_Achr8P02230_001	Banana	plasma membrane	79.91	79.17
GSMUA_Achr5P28770_001	Banana	cytosol	78.04	76.96
PGSC0003DMT400064102	Potato	cytosol	71.96	71.96
PGSC0003DMT400024319	Potato	cytosol	66.82	65.9
PGSC0003DMT400020208	Potato	cytosol	65.89	64.98
PGSC0003DMT400058784	Potato	cytosol	64.95	64.65
PGSC0003DMT400033395	Potato	cytosol	64.95	64.35
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	64.49	63.59
PGSC0003DMT400073077	Potato	cytosol	64.02	63.13
PGSC0003DMT400041813	Potato	cytosol	63.55	60.71
PGSC0003DMT400060649	Potato	cytosol	61.68	59.46
PGSC0003DMT400021064	Potato	cytosol	62.15	58.85
PGSC0003DMT400045950	Potato	cytosol	70.09	58.82
PGSC0003DMT400033664	Potato	cytosol	60.75	58.04
PGSC0003DMT400065028	Potato	cytosol	60.75	57.52
PGSC0003DMT400000356	Potato	cytosol	57.01	50.62

Protein Annotations

EntrezGene:102593961	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1BYN2	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400021692	PGSC:PGSC0003DMG400021692	EnsemblPlants:PGSC0003DMT400055848	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF495	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI000296FB5A	RefSeq:XP_006361966.1

Description

RabA2 [Source:PGSC_GENE;Acc:PGSC0003DMG400021692]

Coordinates

chr3:+:33453316..33454327

Molecular Weight (calculated)

23834.4 Da

IEP (calculated)

7.500

GRAVY (calculated)

-0.278

Length

214 amino acids

Sequence
(BLAST)

001: MAYKVDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVHRWLREL RDHADSNIVI MMAGNKSDLN HLRAIPDQDA RLLAEKEGLS FLETSALEAL NIEKAFQTIL LDIYQIISRK ALAAQEAGAT PGQGTVIKVG
201: DNSGNSNPRP CCSN

Best Arabidopsis Sequence Match ( AT1G07410.1 )
(BLAST)

001: MANRIDHEYD YLFKIVLIGD SGVGKSNILS RFTRNEFCLE SKSTIGVEFA TRTLQVEGKT VKAQIWDTAG QERYRAITSA YYRGAVGALL VYDITKRQTF
101: ENVLRWLREL RDHADSNIVI MMAGNKSDLN HLRSVADEDG RSLAEKEGLS FLETSALEAT NIEKAFQTIL SEIYHIISKK ALAAQEAAGN LPGQGTAINI
201: SDSSATNRKG CCST

Arabidopsis Description

RABA2BRABA2b [Source:UniProtKB/TrEMBL;Acc:A0A178WHD5]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.