Factsheet for PGSC0003DMT400033395

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
vacuole 1
cytosol 4
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400003853

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	PGSC0003DMT400003853	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc03g006270.2.1	Tomato	cytosol	99.54	99.54
PGSC0003DMT400058784	Potato	cytosol	92.59	93.02
KRH20359	Soybean	cytosol, endoplasmic reticulum	87.04	86.64
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	87.04	86.64
AT5G60860.1	Thale cress	cytosol	86.57	86.18
KRH30863	Soybean	cytosol	86.57	86.18
KRH50137	Soybean	cytosol, mitochondrion	86.11	85.71
VIT_10s0003g00550.t01	Wine grape	cytosol	86.11	85.71
TraesCS5A01G184100.1	Wheat	golgi, plastid	85.19	85.19
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	85.19	85.19
TraesCS5D01G188900.1	Wheat	cytosol	84.72	84.72
TraesCS5B01G182200.1	Wheat	cytosol	84.72	84.72
OQU89311	Sorghum	cytosol	84.72	84.72
Os09t0327100-01	Rice	plasma membrane	84.72	84.72
AT3G15060.1	Thale cress	cytosol	84.72	84.33
PGSC0003DMT400024319	Potato	cytosol	84.72	84.33
TraesCS7B01G200600.1	Wheat	cytosol	84.26	84.26
EES19950	Sorghum	cytosol	84.26	84.26
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	84.26	84.26
PGSC0003DMT400039780	Potato	cytosol, mitochondrion	84.26	83.87
TraesCS7D01G289000.1	Wheat	cytosol	83.8	83.8
TraesCS7A01G285200.1	Wheat	cytosol	83.8	83.8
CDX90160	Canola	cytosol	83.33	83.72
Bra010860.1-P	Field mustard	cytosol	83.33	83.72
AT4G18430.1	Thale cress	cytosol	83.8	83.41
GSMUA_Achr3P15540_001	Banana	cytosol	83.33	83.33
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	83.33	83.33
CDX79548	Canola	cytosol	75.93	83.25
CDY35757	Canola	cytosol	83.8	83.03
CDY34094	Canola	cytosol	83.8	83.03
CDY30818	Canola	cytosol	83.8	83.03
CDY15659	Canola	cytosol	83.8	83.03
CDX94631	Canola	cytosol	83.8	83.03
Bra032914.1-P	Field mustard	cytosol	83.8	83.03
Bra030105.1-P	Field mustard	cytosol	83.8	83.03
PGSC0003DMT400020208	Potato	cytosol	83.33	82.95
Os05t0564400-02	Rice	plasma membrane	83.33	82.95
TraesCS1A01G398400.1	Wheat	cytosol	82.87	82.87
TraesCS1B01G426300.1	Wheat	cytosol	82.41	82.41
TraesCS1D01G405900.1	Wheat	cytosol	82.41	82.41
AT2G33870.1	Thale cress	cytosol	82.87	82.11
AT1G28550.1	Thale cress	cytosol	82.87	82.11
Bra022959.1-P	Field mustard	cytosol	82.87	82.11
CDY55638	Canola	cytosol	82.41	82.03
CDY01540	Canola	cytosol	82.41	82.03
CDX76522	Canola	cytosol	82.41	82.03
Bra021009.1-P	Field mustard	cytosol	81.94	81.57
Bra012597.1-P	Field mustard	cytosol	81.94	81.57
Bra021589.1-P	Field mustard	cytosol	81.94	81.19
CDY20100	Canola	cytosol	81.94	81.19
GSMUA_Achr8P27180_001	Banana	cytosol	81.02	81.02
Bra001581.1-P	Field mustard	cytosol	81.48	80.73
GSMUA_Achr5P09130_001	Banana	cytosol	81.02	80.65
CDX82451	Canola	cytosol	81.02	80.28
GSMUA_Achr1P11940_001	Banana	cytosol	80.09	80.09
CDX75804	Canola	cytosol	80.09	79.36
GSMUA_Achr4P02760_001	Banana	cytosol	68.98	78.42
GSMUA_Achr1P04780_001	Banana	cytosol	71.3	77.0
TraesCS3D01G244500.1	Wheat	cytosol	77.31	76.61
TraesCS3A01G247000.1	Wheat	cytosol	77.31	76.61
PGSC0003DMT400073077	Potato	cytosol	76.39	76.04
GSMUA_Achr7P14790_001	Banana	cytosol	67.13	75.52
CDY60884	Canola	cytosol	76.85	74.44
OQU87300	Sorghum	cytosol	74.54	73.52
Zm00001d043935_P001	Maize	cytosol	74.54	73.18
PGSC0003DMT400053686	Potato	cytosol	66.2	66.2
PGSC0003DMT400064102	Potato	cytosol	65.28	65.89
PGSC0003DMT400069776	Potato	cytosol	65.28	65.58
PGSC0003DMT400078200	Potato	cytosol	65.28	65.58
PGSC0003DMT400055848	Potato	cytosol	64.35	64.95
PGSC0003DMT400065028	Potato	cytosol	61.57	58.85
GSMUA_Achr7P10970_001	Banana	cytosol	67.13	57.31
PGSC0003DMT400041813	Potato	cytosol	58.33	56.25
PGSC0003DMT400021064	Potato	cytosol	58.8	56.19
PGSC0003DMT400033664	Potato	cytosol	57.87	55.8
PGSC0003DMT400045950	Potato	cytosol	65.74	55.69
PGSC0003DMT400060649	Potato	cytosol	56.48	54.95
PGSC0003DMT400000356	Potato	cytosol	56.48	50.62
TraesCS3B01G272300.1	Wheat	cytosol	77.31	48.27

Protein Annotations

EntrezGene:102594186	MapMan:22.8.1.1	Gene3D:3.40.50.300	GO:GO:0000166	GO:GO:0003674	GO:GO:0003824
GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787	UniProt:M1AZ31	InterPro:P-loop_NTPase
PFAM:PF00071	EnsemblPlantsGene:PGSC0003DMG400012830	PGSC:PGSC0003DMG400012830	EnsemblPlants:PGSC0003DMT400033395	PRINTS:PR00449	PFscan:PS51419
PANTHER:PTHR24073	PANTHER:PTHR24073:SF842	SMART:SM00173	SMART:SM00174	SMART:SM00175	SMART:SM00176
SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231	UniParc:UPI0002955A38	RefSeq:XP_006343219.1

Description

GTP-binding protein [Source:PGSC_GENE;Acc:PGSC0003DMG400012830]

Coordinates

chr3:+:1716323..1717781

Molecular Weight (calculated)

24024.4 Da

IEP (calculated)

6.137

GRAVY (calculated)

-0.292

Length

216 amino acids

Sequence
(BLAST)

001: MGAYRADEDY DYLFKVVLIG DSGVGKSNLL SRFTKNEFSQ ESKSTIGVEF ATRTIHVDDK IIKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDITRHVT
101: FENVARWLKE LRDHTDQNIV VMLVGNKADL RHLRAVPTGE SSGFAERENT FFMETSALEA LNVENAFTEV LTQIYRVVSR KALDIGDDPT SVPRGQTINI
201: GKDDVSAVKK GGCCSG

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.