CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: endoplasmic reticulum, cytosol

Predictor Summary:

nucleus 2
cytosol 5
mitochondrion 1

Predictors

GFP

MS/MS

Papers

endoplasmic reticulum: 27224218

msms PMID: 27224218 doi

X Wang, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

Inferred distinct locusB in Crop

locusB	locations
KRH05675
KRH28917
KRH76543

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G60860.1	KRH05675	AT3G06540.1	21798944
AT5G60860.1	KRH28917	AT3G06540.1	21798944
AT5G60860.1	KRH76543	AT3G06540.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH50137	Soybean	cytosol, mitochondrion	97.7	97.7
KRH30863	Soybean	cytosol	94.93	94.93
KRH32712	Soybean	cytosol, endoplasmic reticulum, mitochondrion	94.93	94.93
KRH25681	Soybean	cytosol	94.93	94.93
KRH55839	Soybean	endoplasmic reticulum	94.47	94.47
VIT_10s0003g00550.t01	Wine grape	cytosol	93.55	93.55
AT5G60860.1	Thale cress	cytosol	92.63	92.63
OQU89311	Sorghum	cytosol	91.71	92.13
Os09t0327100-01	Rice	plasma membrane	91.71	92.13
Os05t0564400-02	Rice	plasma membrane	91.71	91.71
HORVU5Hr1G056470.1	Barley	cytosol, plasma membrane	91.24	91.67
TraesCS5A01G184100.1	Wheat	golgi, plastid	91.24	91.67
TraesCS7D01G289000.1	Wheat	cytosol	91.24	91.67
TraesCS7A01G285200.1	Wheat	cytosol	91.24	91.67
TraesCS7B01G200600.1	Wheat	cytosol	90.78	91.2
TraesCS5D01G188900.1	Wheat	cytosol	90.32	90.74
TraesCS5B01G182200.1	Wheat	cytosol	90.32	90.74
Zm00001d009572_P001	Maize	cytosol, mitochondrion, plasma membrane	89.86	90.28
EES19950	Sorghum	cytosol	89.86	90.28
CDY30818	Canola	cytosol	90.32	89.91
CDY34094	Canola	cytosol	90.32	89.91
Bra032914.1-P	Field mustard	cytosol	90.32	89.91
Bra010860.1-P	Field mustard	cytosol	88.94	89.77
CDX90160	Canola	cytosol	88.94	89.77
CDY35757	Canola	cytosol	89.86	89.45
AT3G15060.1	Thale cress	cytosol	89.4	89.4
TraesCS1A01G398400.1	Wheat	cytosol	88.94	89.35
CDX94631	Canola	cytosol	89.4	88.99
Bra030105.1-P	Field mustard	cytosol	89.4	88.99
TraesCS1D01G405900.1	Wheat	cytosol	88.48	88.89
TraesCS1B01G426300.1	Wheat	cytosol	88.48	88.89
Bra001581.1-P	Field mustard	cytosol	88.94	88.53
CDY15659	Canola	cytosol	88.94	88.53
Zm00001d039016_P001	Maize	cytosol, mitochondrion, plasma membrane	88.02	88.43
CDX82451	Canola	cytosol	88.48	88.07
AT1G28550.1	Thale cress	cytosol	88.48	88.07
CDX79548	Canola	cytosol	79.72	87.82
GSMUA_Achr5P09130_001	Banana	cytosol	87.56	87.56
GSMUA_Achr3P15540_001	Banana	cytosol	87.1	87.5
GSMUA_Achr1P11940_001	Banana	cytosol	87.1	87.5
AT2G33870.1	Thale cress	cytosol	87.56	87.16
CDX75804	Canola	cytosol	87.56	87.16
PGSC0003DMT400033395	Potato	cytosol	86.64	87.04
Solyc03g006270.2.1	Tomato	cytosol	86.18	86.57
PGSC0003DMT400058784	Potato	cytosol	85.71	86.51
GSMUA_Achr8P27180_001	Banana	cytosol	85.71	86.11
Bra022959.1-P	Field mustard	cytosol	86.18	85.78
Solyc10g008840.2.1	Tomato	cytosol	84.79	85.58
Bra021589.1-P	Field mustard	cytosol	85.25	84.86
CDY20100	Canola	cytosol	85.25	84.86
GSMUA_Achr4P02760_001	Banana	cytosol	73.27	83.68
KRH22324	Soybean	cytosol, endoplasmic reticulum	82.95	82.57
KRH27001	Soybean	cytosol, endoplasmic reticulum	82.95	82.57
AT4G18430.1	Thale cress	cytosol	82.49	82.49
GSMUA_Achr1P04780_001	Banana	cytosol	75.58	82.0
CDX76522	Canola	cytosol	81.57	81.57
CDY01540	Canola	cytosol	81.57	81.57
CDY55638	Canola	cytosol	81.57	81.57
Bra012597.1-P	Field mustard	cytosol	81.11	81.11
Bra021009.1-P	Field mustard	cytosol	81.11	81.11
GSMUA_Achr7P14790_001	Banana	cytosol	70.97	80.21
TraesCS3A01G247000.1	Wheat	cytosol	80.18	79.82
TraesCS3D01G244500.1	Wheat	cytosol	80.18	79.82
KRH27364	Soybean	endoplasmic reticulum	78.34	78.34
KRH21946	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	78.34	78.34
KRH22259	Soybean	cytosol, nucleus	76.96	76.61
OQU87300	Sorghum	cytosol	76.96	76.26
KRH27074	Soybean	cytosol, endoplasmic reticulum, mitochondrion, nucleus	76.5	76.15
Zm00001d043935_P001	Maize	cytosol	76.96	75.91
CDY60884	Canola	cytosol	74.19	72.2
KRH24729	Soybean	endoplasmic reticulum, nucleus	69.59	69.91
KRG97821	Soybean	cytosol, endoplasmic reticulum, nucleus	69.59	69.59
KRH29738	Soybean	endoplasmic reticulum	69.12	69.44
KRH26288	Soybean	endoplasmic reticulum	69.12	69.12
KRH15036	Soybean	cytosol, nucleus	68.66	68.98
KRH06049	Soybean	endoplasmic reticulum	68.2	68.52
KRH73103	Soybean	cytosol, endoplasmic reticulum, nucleus	67.28	67.28
KRH71891	Soybean	cytosol	61.75	60.09
GSMUA_Achr7P10970_001	Banana	cytosol	69.12	59.29
KRH33003	Soybean	cytosol	61.29	59.11
KRH75359	Soybean	endoplasmic reticulum	59.45	57.85
KRG88929	Soybean	cytosol	58.99	57.4
KRH31313	Soybean	endoplasmic reticulum	58.06	56.5
KRH59301	Soybean	cytosol, endoplasmic reticulum	59.45	56.33
KRH36458	Soybean	cytosol	58.06	55.26
KRH27503	Soybean	cytosol	57.6	54.82
KRG97554	Soybean	cytosol, endoplasmic reticulum	56.22	54.71
KRH43151	Soybean	cytosol, endoplasmic reticulum	58.53	53.59
KRH68938	Soybean	cytosol	55.76	51.27
KRG97215	Soybean	cytosol	55.76	51.27
KRH06418	Soybean	cytosol	57.6	51.23
KRH47850	Soybean	cytosol	57.14	50.61
TraesCS3B01G272300.1	Wheat	cytosol	80.18	50.29

Protein Annotations

EntrezGene:100805995	MapMan:22.8.1.1	Gene3D:3.40.50.300	EMBL:ACUP02008255	EnsemblPlantsGene:GLYMA_13G172800	GO:GO:0000166
GO:GO:0003674	GO:GO:0003824	GO:GO:0003924	GO:GO:0005488	GO:GO:0005525	GO:GO:0016787
UniProt:I1M049	EnsemblPlants:KRH20359	ProteinID:KRH20359	ProteinID:KRH20359.1	InterPro:P-loop_NTPase	PFAM:PF00071
PRINTS:PR00449	PFscan:PS51419	PANTHER:PTHR24073	PANTHER:PTHR24073:SF649	SMART:SM00173	SMART:SM00174
SMART:SM00175	SMART:SM00176	SUPFAM:SSF52540	InterPro:Small_GTP-bd_dom	InterPro:Small_GTPase	TIGRFAMs:TIGR00231
UniParc:UPI000233B684	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:+:28683493..28686774

Molecular Weight (calculated)

24200.5 Da

IEP (calculated)

5.735

GRAVY (calculated)

-0.265

Length

217 amino acids

Sequence
(BLAST)

001: MGAYRADDDY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIRVDDK VVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV VMLVGNKADL RHLRAVSTED ARTFAERENT FFMETSALES LNVENAFTEV LTQIYHVVSK KALEIGDDPA ALPKGQTINV
201: GSRDDVSAVK KSGCCSA

Best Arabidopsis Sequence Match ( AT5G60860.1 )
(BLAST)

001: MAAYRADDEY DYLFKVVLIG DSGVGKSNLL SRFTRNEFSL ESKSTIGVEF ATRSIHVDDK IVKAQIWDTA GQERYRAITS AYYRGAVGAL LVYDVTRHVT
101: FENVERWLKE LRDHTDANIV IMFVGNKADL RHLRAVSTED AKAFAERENT FFMETSALES MNVENAFTEV LSQIYRVVSR KALDIGDDPA ALPKGQTINV
201: GSKDDVSAVK KVGCCSN

Arabidopsis Description

RABA1FRas-related protein RABA1f [Source:UniProtKB/Swiss-Prot;Acc:Q9FJH0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.